Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2631 ATGGGCCCCAAATTTGCCTTGGGTGAAGTGGGCATGATTTATGACCTATCCCTTATAACGTTTCGCATTAGGGATAACCATGTCTATCGTAATTCTAACGCGATCGTCATGTCTATCTTGATTCTTATTTTTGTCCATTCAAGCGACGTTATCGAAGGGTTTTCGTCTTTACGGGGGTTGGTTCGCATTGCGAGCGACGGGCTCTGCTCGAGATCCAGGGTTTCGTTTCGAGGGGTTTATCTTGTTCTTGGATTAGATTCTGCCTTTGCTGTATTTCGATTTTTCTCTCCTTCTCGTGTTTTTCTTTCGTTTTCTTTTTGCTTCTCCCAAAGGCGGGAGCGGAAGGATGAAATAGTGAATTTGTTCCACGAGCTTGAGATTCCCACAAATGGCAACCCTTGCGTACACTGGTCGACGACAGAAGGACTCCGTTGTCCGGATAAATTGCTGGGAATTAATCCTATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCGGATTACCGACATGCTGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACGCTTGATGATTCACGGGCCATTAAGAGGAAACGTATTAGTATGAATGCAGATGGTTTCGATTGTTTTGGTGCTCCTCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTAAAGTTAGAACTTGAACAGGTCCGACTGCTGCAAAAAAAAGCTTCTAATGTTAGCTCAATTTTTGCCGTCTCTTCATCTAGTAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTTAATAGGTTGTCTGAGGTATCAGTTCCTCCTGCTAAAAAGCCACTGCCCTCTGGGCGCAATGGGCCTTCTGCTAAAAGAAGCTCATCTGGGCGGTTTGAGTCTGCTAAAACAGCTGCTGTATCTGCTTCCTCGACAGCGTCATTGAAACAATGTGAACAGCTGCTGCAACGCTTGATGTCACATACGTTTGGTTGGGTTTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTACTTTACTGTCATAAAGCATCCTATGGATCTGGGCACTGTAAAGTCTAAGATAACTGCAGGAGAATATACACATCCGATGGATTTTGCTGCTGATGTTCGACTTACTTTTTCAAACGCGATGACTTACAACCCTCCCGGGAATGACGTCCATACCATGGCTAAGACACTAAGTAAATTTTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTGACAAGTGAAGAACAACGCCAAGTACCTTCAGCCACATTTGTTCCTAAGGAAACTGAAAGTACTCTGCCAGTGCCACCTTCAAAAAAGACGAAAATCCCTACAAATGACCCTGATGTTCAGCCAACTAGTGTGGTAAGAATCATGACCGAGCAGGAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTGGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATTGATGCTCTTAGTGATGATACCTTGTTTGCATTGAGGAAGCTATTAGACGATTATATGATGGAAAAGCAGAAACGCACAAAGGCTGAACCATGTGTAGTGGAGCTTCATAACGAATCAGGATTTAGCAATTCATCAATGCCACCCAGTAAAGGAAATGATCCCATTGATGAGGATGTAGACATTGTTGGTGGGAATGACCCCCCTGTTTCAAGCTATCCTCCAATAGAGATAGAAAAAGATGCAGTTCGTAGGGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGATTCTGGCTCAGAAAGCTTGTCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGGAAATTTTGGGTTCTGAAACAAATGTGGATCGGAAGCAAAATGAACTTGGTGATTTAGAAATTGGAAATTATGAAGAAAATGGGATTGATCTAGTTGAGCAAACCGCCCAGGCCAATACAAACACTATCGAGTCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAACCGTTTTGCTGACACAATACTGAAAGCTCGAGAGAAGGCACTTGAAAAGGGTGACAAACGGGATCCTGAAAAAGTGCGAATGGAAAGGGAAGAACTCGAAAGACAACAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCTGAAGCTGAAGCTGCGGCCGAAGCTAAGAAGAAAAGAGAGTTAGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAAGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTGGAGATGCTTAGGGCTTCCAACGATGAGCATCTACCGAACTTCACAGAGGAGTCAAGCCCAGAACATTCTCAAAATGGATTTGGCAGTTTCAAGCTTCAAGGTAGTAACCCCTTAGAACAGCTTGGTTTGTACATGAAGATGGACGAGGAAGATGAAGAGGAAGAAAGTGAACCACCCCAAAGTGTTAATAAGCCAGCAAACGATGTTGAAGAAGGGGAAATCGATTAG 2790 43.73 MGPKFALGEVGMIYDLSLITFRIRDNHVYRNSNAIVMSILILIFVHSSDVIEGFSSLRGLVRIASDGLCSRSRVSFRGVYLVLGLDSAFAVFRFFSPSRVFLSFSFCFSQRRERKDEIVNLFHELEIPTNGNPCVHWSTTEGLRCPDKLLGINPMAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRISMNADGFDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRLLQKKASNVSSIFAVSSSSNIQSSSDQHRGAPPETFNRLSEVSVPPAKKPLPSGRNGPSAKRSSSGRFESAKTAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPMDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKFFEVRWKTIEKKLPVTSEEQRQVPSATFVPKETESTLPVPPSKKTKIPTNDPDVQPTSVVRIMTEQEKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDDYMMEKQKRTKAEPCVVELHNESGFSNSSMPPSKGNDPIDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESDSGSESLSGSESNAAKALDSNVAPKEILGSETNVDRKQNELGDLEIGNYEENGIDLVEQTAQANTNTIESDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKMDEEDEEEESEPPQSVNKPANDVEEGEID 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33912287 33919910 - CrPI670011_06g026310.1 Cre06g2631 502093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2631 929 SUPERFAMILY Bromodomain 339 464 IPR036427 GO:0005515(InterPro)
Cre06g2631 929 MobiDBLite consensus disorder prediction 645 673 - -
Cre06g2631 929 Gene3D - 508 584 IPR038336 -
Cre06g2631 929 MobiDBLite consensus disorder prediction 596 744 - -
Cre06g2631 929 PRINTS Bromodomain signature 389 405 IPR001487 GO:0005515(InterPro)
Cre06g2631 929 PRINTS Bromodomain signature 423 442 IPR001487 GO:0005515(InterPro)
Cre06g2631 929 PRINTS Bromodomain signature 405 423 IPR001487 GO:0005515(InterPro)
Cre06g2631 929 PRINTS Bromodomain signature 373 386 IPR001487 GO:0005515(InterPro)
Cre06g2631 929 MobiDBLite consensus disorder prediction 467 505 - -
Cre06g2631 929 Coils Coil 260 280 - -
Cre06g2631 929 Pfam Bromodomain 362 446 IPR001487 GO:0005515(InterPro)
Cre06g2631 929 ProSiteProfiles Bromodomain profile. 370 442 IPR001487 GO:0005515(InterPro)
Cre06g2631 929 MobiDBLite consensus disorder prediction 332 347 - -
Cre06g2631 929 ProSiteProfiles NET domain profile. 503 584 IPR027353 -
Cre06g2631 929 SMART bromo_6 351 461 IPR001487 GO:0005515(InterPro)
Cre06g2631 929 MobiDBLite consensus disorder prediction 711 737 - -
Cre06g2631 929 MobiDBLite consensus disorder prediction 296 347 - -
Cre06g2631 929 MobiDBLite consensus disorder prediction 686 700 - -
Cre06g2631 929 FunFam Transcription factor GTE4 334 469 - -
Cre06g2631 929 MobiDBLite consensus disorder prediction 861 929 - -
Cre06g2631 929 PANTHER TRANSCRIPTION FACTOR GTE8 236 908 IPR052442 -
Cre06g2631 929 Gene3D - 336 475 IPR036427 GO:0005515(InterPro)
Cre06g2631 929 Pfam Bromodomain extra-terminal - transcription regulation 513 574 IPR027353 -
Cre06g2631 929 MobiDBLite consensus disorder prediction 768 828 - -
Cre06g2631 929 Coils Coil 781 829 - -
Cre06g2631 929 CDD Bromo_plant1 359 456 IPR037377 -
Cre06g2631 929 MobiDBLite consensus disorder prediction 468 505 - -
Cre06g2631 929 MobiDBLite consensus disorder prediction 871 890 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2631 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2025 Cre-Chr4:37540425 Cre06g2631 Cre-Chr6:33912287 1.40E-40 dispersed
Cre04g2179 Cre-Chr4:38936693 Cre06g2631 Cre-Chr6:33912287 8.50E-10 dispersed
Cre06g2631 Cre-Chr6:33912287 Cre10g1139 Cre-Chr10:23482575 1.80E-48 dispersed
Cre05g1490 Cre-Chr5:19299282 Cre06g2631 Cre-Chr6:33912287 6.30E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47