Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2634 ATGGTACTGAATGAGGATTCCATGGGCTTGACTTTAATGGGCCATAGGCCCATATTGAATACTGGCCCAACAAGAACGTATTGGCTATTGGCGACGGTGAATCTATATCGTCCTTCGGTTCCTTCTCTCGTCGGAACCAACGCAAGCTTAGACAGTGAAGCGGAACTCTCGAGTCTCGAGTCTCGAGTCAAGATTGCAGACATGGCGGCAACGAAAGAAGCAAAATGTAAAAGTGATTCTGTTGTGAGTGATCTTCTCCAGTTCTTGAACGCTTCCCCAACTGCTTTCCACGCCGTTGAGGAGGCAAAGAAGCGTCTACTAAGCGCTGGATATGAACAAGTATCTGAAAGAGCGGACTGGAAATTAGAAGCCGGGAAGAAGTACTTCTTTACCAGAAACCATTCAACTATTGTTGCTTTCGCGATCGGTAAAAAATATGTTGCTGGGAATGGATTTCATATTGTTGGTGCGCATACTGACAGCCCTTGTTTGAAACTGAAGCCCGTGTCCAAGGTAACGAAAGGAGGATATCTGGAAGTTGGCGTTCAAACGTATGGGGGTGGGTTGTGGCACACATGGTTTGACCGTGACTTAACAGTTGCTGGAAGGGTGATTATAAAGGAAGAAAAAGGTGGTTCTGTTTCATATATTCATCGACTTGTTCGAGTTGAGGATCCTATAATGAGAATCCCGACACTAGCAATTCACTTGGACAGGGGCACAGATGGATTTAAGGTGAACACACAGAGTCATCTTCTCCCAGTTTTGGCAACAAGTATTAAGGGGGAATTGAACAAAGTTGTTATCAAGAATGATGCACAACTTGATGGAGAGAAAACAGATCCTAAATCCAGTCCCAATAGCTCAAAGCATCACACGCTTCTATTACAGCTACTTGCCGATCAACTCAAATGTGAACCAGATGACATATGCGATTTTGAATTGCAAGCTTGTGACACACAACCTAGTGTGGTTGGTGGTGCCCAGAAGGAATTCATTTTCTCTGGAAGGCTTGATAATTTATGCATGTCATTTTGCTCTTTGAAGGCGCTGATTGACAGTACATCTTCTCAAACTAGCCTTGAGAATGAGCCTGGCGTTAGAATGGTGGCCTTGTTCGACCATGAAGAAGTTGGATCTGATTCGGCCCAGGGAGCTGGTTCCCCAGCAATGCTTAATGCTTTATCACGAATTACAAACTCCTTCAGCTCTGACTCTTCGCTGGTTGAGAAAGCTATCCAGAGAAGTTTCCTGGTCTCAGCTGACATGGCACATGCATTACACCCTAATTATATGGATAAGCATGAAGAAAATCATCAGCCCAAGTTGCATGGAGGGTTGGTTATCAAGAACAATGCAAATCAGCGATATGCAACCAACGCAGTCACGTCATTCATATTCAGGGAATTGGCTGTGAATCATAACCTTCCTGTTCAGGATTTTGTGGTCCGCAACGACATGGCTTGTGGTTCAACCATCGGCCCCATTCTTGCCAGTGGCGTAGGTATACGGACAGTAGATGTTGGAGCGCCACAGCTATCAATGCACAGTATTCGGGAAATGTGTGCTACAGATGATATCAATCACTCGTACGAGCATTTTAAGGCCTATTACGAAGAGTTCTCTAGTCTCGATGAGAAGATCACTGTCGATATCTGCCGTTCAAAGCAACCTGTCTTACAACATGCGTTAGGATGTTGGAAAAATACTCAGAATAGTAATCGAAATATACAGACAGGAAAGAAGATAACAGAGAAGGATTTTTTGAGTAAAACCCGCTTTGGTTTGAGTACGAATTTTGCAGGGATTTACTTCGAGGGACGGAGATCAAAAAGGGATGCAGACTGGGTGAAGCAGGAATAA 1863 44.28 MVLNEDSMGLTLMGHRPILNTGPTRTYWLLATVNLYRPSVPSLVGTNASLDSEAELSSLESRVKIADMAATKEAKCKSDSVVSDLLQFLNASPTAFHAVEEAKKRLLSAGYEQVSERADWKLEAGKKYFFTRNHSTIVAFAIGKKYVAGNGFHIVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIKEEKGGSVSYIHRLVRVEDPIMRIPTLAIHLDRGTDGFKVNTQSHLLPVLATSIKGELNKVVIKNDAQLDGEKTDPKSSPNSSKHHTLLLQLLADQLKCEPDDICDFELQACDTQPSVVGGAQKEFIFSGRLDNLCMSFCSLKALIDSTSSQTSLENEPGVRMVALFDHEEVGSDSAQGAGSPAMLNALSRITNSFSSDSSLVEKAIQRSFLVSADMAHALHPNYMDKHEENHQPKLHGGLVIKNNANQRYATNAVTSFIFRELAVNHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCATDDINHSYEHFKAYYEEFSSLDEKITVDICRSKQPVLQHALGCWKNTQNSNRNIQTGKKITEKDFLSKTRFGLSTNFAGIYFEGRRSKRDADWVKQE 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33935947 33947566 + CrPI670011_06g026340.1 Cre06g2634 502096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2634 620 CDD M18_DAP 84 539 - -
Cre06g2634 620 Gene3D Zn peptidases 85 537 - -
Cre06g2634 620 PANTHER ASPARTYL AMINOPEPTIDASE 74 551 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cre06g2634 620 SUPERFAMILY Aminopeptidase/glucanase lid domain 164 316 - -
Cre06g2634 620 FunFam Aspartyl aminopeptidase 1 163 322 - -
Cre06g2634 620 SUPERFAMILY Zn-dependent exopeptidases 79 539 - -
Cre06g2634 620 Pfam Aminopeptidase I zinc metalloprotease (M18) 88 538 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cre06g2634 620 Gene3D Aminopeptidase i, Domain 2 162 321 IPR023358 GO:0004177(InterPro)
Cre06g2634 620 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 185 205 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cre06g2634 620 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 505 520 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cre06g2634 620 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 416 432 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cre06g2634 620 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 373 391 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cre06g2634 620 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 152 168 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cre06g2634 620 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 224 241 IPR001948 GO:0004177(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cre06g2634 620 FunFam Probable aspartyl aminopeptidase 312 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2634 K01267 - - csv:101216468 915.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2347 Cre-Chr5:35093157 Cre06g2634 Cre-Chr6:33935947 2.60E-158 dispersed
Cre06g2633 Cre-Chr6:33928195 Cre06g2634 Cre-Chr6:33935947 2.40E-227 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g144 . Blo16g00264 . . . . . . . . . Cma11g00045 . Car11g00040 . . Cpe04g01605 Bhi02g00539 . . . Hepe09g0063 . . Cla06g01730 Cam06g1921 Cec06g1971 Cco06g1975 Clacu06g1877 Cmu06g1819 Cre06g2634 . Cone16ag0029 . . . . . . . . . . . Bpe15g00210 Bma03g01265 . . . Cmo11g00046 . . . . . . . . . . . . . . . . . . . . Lsi06g01628 Csa01g00070 Chy02g02650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003516 0 2 1 1 1 2 1 2 2 2 1 2 1 1 1 2 2 2 1 2 2 1 2 2 1 2 2 4 1 1 47