Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2635 ATGACGTCGACGTATCTTCTCTATGAATCTGCTTCTGGTTATGCTCTGTTTCATGTCCATGGCCTTGACGAAATTGGGCAGAACACGGAAGCCGTTCGGAGCTCCGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTCCACCCTTTCGAGTCGGCTCTCGATGCTCTCAAGCAGTGCAACTCAGTCTCTGAAGGGCTCATGACTGACGAGTTGAGGAGTTTTTTGGAAATTAACCTTCCAAAAGTTAAGGAAGGTAAGAAGGCCAAGTTCGTTTTGGGACTAGCTGAACCCAAAATTGGGTCAAACATCTTTGAAGAGACTAAAATCCCATGCCAAAGCAATGAGTTTGTTCTGGAGCTGCTCCGGGGTGTGCGTCTACACTTTGACAAATTTATCAAAGACCTCAAGCCAGGGGATTTGGAGAAGGCCCAACTTGGTTTGGGACACAGTTACAGTCGAGCTAAAGTAAAGTTCAATGTTAACCGTGTTGATAATATGGTGATTCAGGCGATCTTCCTTCTTGACACTCTAGACAAGGACATCAATTCCTTCTCAATGAGAGTCAGAGAGTGGTATTCGTGGCATTTCCCTGAGTTGGTGAAGATTGTCAGTGACAATTATCTTTATGCTAAAGTTGCTAAATTTATTGAGGACAAGTCGAAGTTGGCAGAAGATAAAATCCCTGCCTTGACTGACATAATTGGCGATGAAGATAAAGCGAAGGAGATTGTTGAAGCAGCCAAAGCCTCCATGGGCCAGGATTTGTCTGCCATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTTTCTGAATACAGGAAGAAGCTTTATGATTATCTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCATGCGGGCAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACCCTTCAGATTCTTGGTGCGGAGAAAGCACTCTTCAGGGCTTTGAAAACAAGAGGAAACACTCCTAAATATGGTCTGATTTTTCATTCTTCTTTCATTGGGCGAGCATCTGCACGGAACAAAGGCCGAATGGCTCGTTATCTTGCAAATAAATGTTCTATTGCATCACGTATTGATTGCTTTGCAGAGAGCAGCACCACAACCTTTGGAGAAAAACTTCGTGAGCAAGTTGAAGAGCGCCTTGACTTTTATGACAAGGGAATAGCACCTCGTAAAAACATAGATGTTATGAAAGCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGATGTAGAAGAAGTGGCAAGTGAAGCTTCAGGGAAGAAGAGCAAGAAAAAGAAATCAAAAGCTAATGTGAATGGCGAAGTTGAAGACAGGCCAAGTGCGACTGAAAACGGTGATGTTTCAGAGGATACAAAATCAGAAAAGAAGAAAAAGAAGGAGAAGCGAAAGTTGGGTAGGGAAACAGAGGAGCAGCAGCAGGCTGCAGAAATCGTAAATGGAGTAAACGGGGAGGAGGAATCTGGCAAGAAGAAGAAGAAAAAGAAGAGCAAGGATGAAAATAAGGGGGATGATCATGTTGCTGCAGAAGATGCTGTAGAAATGCCCCTTGTGGCTGTTTTTGGTCTCCGACCTCTATATTTTTGTCCATCAGCAAAACTTATGCCAATATGCACGGTTGAAGAGGAAGAAGACGACGACGACGACCAAACAGCCATGGCCAGTAGTTCTGGATCAGCGAGCTTAGAAGATGTCCCTTCCATCCATCTCATGACCGAGCTCCTCCGTCGCATGAAATGCGCTTCAAAACCCGACAAGCGCCTCATTCTCATTGGTCCACCTGGATCAGGAAAAGGCACCCAATCTCCAATCATCAAGGATGAATACTGCTTGTGTCACTTGGCAACTGGTGATATGTTAAGAGCTGCTGTTGCTGCTAAAACTCCACTTGGTGTTAAGGCTAAGGAGGCCATGGACAAGGGTGAACTTGTGTCTGATGACTTGGTTGTTGGCATCATTGAGGAAGCAGTGAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCCAGAACCGTGGTCCAAGCACAGAAGCTGGATGAGATGCTAGAAAAGCAGGATGCTAAAATTGATAGGGTGCTTAATTTTTCGATTGATGATGCGATCTTGGAGGAGAGGATTACTGGACGATGGATACACCAAGCGAGCGGAAGGTCTTATCACACAAAATTTGCTCCTCCAAAGGTTGCTGGTGTCGATGATGTAACGGGAGAACCTTTGATTCAACGTAAGGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGCAAACAGAACCGGTGATTGATTACTATTCCAAGAAGGAAATTGTCGCAGATCTTCAAGCAGAGAAGCCTCCCAAACAGTCTGCAGATTCTTTGGATATTGAAATTCCATGTTTTGTTGGAATTTCTTTATCGAACAGCCCCCATTGGAATTGCATTGCTATTTGA 2541 44.43 MTSTYLLYESASGYALFHVHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVAKFIEDKSKLAEDKIPALTDIIGDEDKAKEIVEAAKASMGQDLSAIDLINVQQFAQRVMDLSEYRKKLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAESSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKAAIESADNKATDMDVEEVASEASGKKSKKKKSKANVNGEVEDRPSATENGDVSEDTKSEKKKKKEKRKLGRETEEQQQAAEIVNGVNGEEESGKKKKKKKSKDENKGDDHVAAEDAVEMPLVAVFGLRPLYFCPSAKLMPICTVEEEEDDDDDQTAMASSSGSASLEDVPSIHLMTELLRRMKCASKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIEEAVKKPSCQKGFILDGFPRTVVQAQKLDEMLEKQDAKIDRVLNFSIDDAILEERITGRWIHQASGRSYHTKFAPPKVAGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKEIVADLQAEKPPKQSADSLDIEIPCFVGISLSNSPHWNCIAI 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33947611 33955186 - CrPI670011_06g026350.1 Cre06g2635 502097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2635 846 MobiDBLite consensus disorder prediction 434 537 - -
Cre06g2635 846 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 5 531 IPR045056 GO:0030515(PANTHER)|GO:0030515(InterPro)|GO:0031428(PANTHER)|GO:0031428(InterPro)|GO:0032040(PANTHER)|GO:0032040(InterPro)
Cre06g2635 846 MobiDBLite consensus disorder prediction 572 592 - -
Cre06g2635 846 Hamap Adenylate kinase [adk]. 616 828 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cre06g2635 846 Pfam Adenylate kinase, active site lid 742 777 IPR007862 GO:0004017(InterPro)
Cre06g2635 846 MobiDBLite consensus disorder prediction 459 487 - -
Cre06g2635 846 FunFam Adenylate kinase mitochondrial 616 828 - -
Cre06g2635 846 MobiDBLite consensus disorder prediction 514 537 - -
Cre06g2635 846 Gene3D - 589 825 IPR027417 -
Cre06g2635 846 ProSitePatterns Adenylate kinase signature. 696 707 IPR033690 -
Cre06g2635 846 Pfam Adenylate kinase 620 805 - -
Cre06g2635 846 NCBIfam adenylate kinase 617 821 IPR006259 GO:0004017(InterPro)|GO:0005524(InterPro)|GO:0016776(InterPro)
Cre06g2635 846 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Cre06g2635 846 PRINTS Adenylate kinase signature 647 661 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cre06g2635 846 PRINTS Adenylate kinase signature 619 632 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cre06g2635 846 PRINTS Adenylate kinase signature 696 712 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cre06g2635 846 PRINTS Adenylate kinase signature 792 806 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cre06g2635 846 PRINTS Adenylate kinase signature 775 790 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cre06g2635 846 SUPERFAMILY Nop domain 164 413 IPR036070 -
Cre06g2635 846 MobiDBLite consensus disorder prediction 434 451 - -
Cre06g2635 846 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Cre06g2635 846 FunFam Nucleolar protein 56 300 412 - -
Cre06g2635 846 SMART NOSIC_2 171 223 IPR012976 -
Cre06g2635 846 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Cre06g2635 846 Gene3D - 142 299 - -
Cre06g2635 846 Gene3D Nop domain 300 412 IPR042239 -
Cre06g2635 846 CDD ADK 617 817 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cre06g2635 846 FunFam Nucleolar protein 56 141 299 - -
Cre06g2635 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 805 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2635 K14564 - - csv:101216223 950.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2635 Cre-Chr6:33947611 Cre11g0848 Cre-Chr11:5656109 4.40E-30 dispersed
Cre02g1946 Cre-Chr2:32851765 Cre06g2635 Cre-Chr6:33947611 1.10E-90 transposed
Cre03g0659 Cre-Chr3:5484274 Cre06g2635 Cre-Chr6:33947611 3.60E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45