Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2660 ATGACCAGAAGGCGCCTTCGCCTGAGCTGGTCTTCCGACGAAGACTTGGAACACGACCCACACTGCCCTGATTCCTCCCCCACCTCTCTTCAGCCTCTCATTCTCCACAATCTCAACTCTCATTTTAATCCCAGCGTTTCTGAACCCCTCCAAGTTCCCGATTCCGACGACGACGAACAAGATTTTATCGACGTCTCCGACCATCTCTCCCCTCCCTCTCCGGATTCTGATCATTCTCTCCCTCACTCGCCCCAACCGAACCCGCTCAGTCCTGTTGTCGCTTCCATCCACCCGCCGTGTCCTGTAAGCGACTTCCTTCGGGGACTTGGTTTAAGCTTGAAGAGAGAGTGGTTAGATGCCTGTATCCGTGCCCTACAAGGGTCTGTACCACATTTTTTCAGCCTCAACCCTGCGGAGAAAGGAAAGCTGTGTTTCGAGCAGTTCTTGGTTTCTGATATGAATTACGCGGGTGCTGGAGTCTTGCCTGAAAATGTTGATTCTATGCATCTCGTTGATCTTCCCGGTCCGTACGTACTGCAGGTCGATGAAATAGTAAACATCAGTTGTGCTCTGAAAGGTAGATATCAGACTGCCCCTGCGAATATTAAGAGGTGCCTTAAACTGTCCATGACGGATGGTGTTCAACGAGTTTTTGGCATGGAATACAGGCCTATTAAGGATCTTGAAGTTTTATCCCCTGCTGGGTTGAAGGTAGTAATCTGCAATGTAAGTGTACGACGTGGGCTTCTAATGCTAGTTCCTGAAGCTTTTGAGGTTCTAGGAGGTCTGGTTGAGGAATTGGAGGCAGCTCGGAAGCGGCTTGTTGATGAAGTGAACAAGCCACCTAGAGGAAGGAGAACGAGGACAGGCGAAGTTCCTCCTTTGGCGAGCAGAGCAACACGTGCTGCATGGCCATCAGACAATGTTCAAGAGCCTGCGCATCCTAGCAGAATAGTGGATACTGAACCCTCTCGTTCAGACCAAGGTGCTCGTATGTTCCATGGGAGAAATGAAGCATTTACTGCTCCAGTTGGTGATGCATTTACTACTCCCGTCAGTAGAACAAATGCTAATTTGGAGTCATCTTCTAATTTTGTTTCAACTGTTGAGGAGATTCATTCACATTCCGTGCCCAGTGGTATTGCTAGTACGGAGCCTACAATTGTGTCCAATTCGGTAGAGGACACCAATGTGGTCAACTTGGTAGACGATACCAATACAGCCAATTCAGTAGACGATACCAATACGTTCAACTCAGTAGAGGATACCATTATGGTCGATATTGAGCATCCACTCATTTTATCTGGTGATAGAGAAATTCCTTTCACTTACTTGGCTAGTTTGTCGGCTAAGTGGGCAGCAGTGAAGGAAAAATCTGCATCAGTTCGTGGAAAAATCAAGTGCTTTTTGACTGGTGTAAAAGGATTTCAATTCAGGCAAAGGGCAACATACGAGCTGCATGTGTATGTTGACGACGGTAGCCTCATTTCTGAGGTCCTCATTGATCACGAGGTAGTGGAAAAAGCGATTGGCCGTTCTCCCATGGATGTTACTGATGCTCTTGATTCTTCTGATGTCAAAGTAGTGAGTGTTATGAAGGAGACCATGAGACAGTTTCAAATTTTCTTGGTAAATTTTGAGGGTACAATGCTGGTTGAGATGAATAGAACGTCTTCTCTGCCAGTTGTCCTTGAGATGGCGGAGGGTTGTCTGGAATCTGATGCTCGGTTGCTTTTGAGAAGACTCACGTGTTCAAATGCTGTTCCAATTGATGAGCATGCCCGCTATCTTGGACTGAGGATCAAGGCAGTAAAGCTTTTCTGGAGTTACACATTCTCGTTAACAGGGACAATTGAAAAGAGCTTGATGGAAGGGCCACAGATTCACACAAAACCGTATGATGTCCGTTTGGCGACAATTGCAGGCTCGAAATCAATGGTTTTATAG 1947 46.84 MTRRRLRLSWSSDEDLEHDPHCPDSSPTSLQPLILHNLNSHFNPSVSEPLQVPDSDDDEQDFIDVSDHLSPPSPDSDHSLPHSPQPNPLSPVVASIHPPCPVSDFLRGLGLSLKREWLDACIRALQGSVPHFFSLNPAEKGKLCFEQFLVSDMNYAGAGVLPENVDSMHLVDLPGPYVLQVDEIVNISCALKGRYQTAPANIKRCLKLSMTDGVQRVFGMEYRPIKDLEVLSPAGLKVVICNVSVRRGLLMLVPEAFEVLGGLVEELEAARKRLVDEVNKPPRGRRTRTGEVPPLASRATRAAWPSDNVQEPAHPSRIVDTEPSRSDQGARMFHGRNEAFTAPVGDAFTTPVSRTNANLESSSNFVSTVEEIHSHSVPSGIASTEPTIVSNSVEDTNVVNLVDDTNTANSVDDTNTFNSVEDTIMVDIEHPLILSGDREIPFTYLASLSAKWAAVKEKSASVRGKIKCFLTGVKGFQFRQRATYELHVYVDDGSLISEVLIDHEVVEKAIGRSPMDVTDALDSSDVKVVSVMKETMRQFQIFLVNFEGTMLVEMNRTSSLPVVLEMAEGCLESDARLLLRRLTCSNAVPIDEHARYLGLRIKAVKLFWSYTFSLTGTIEKSLMEGPQIHTKPYDVRLATIAGSKSMVL 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34158876 34163000 - CrPI670011_06g026600.1 Cre06g2660 502122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2660 648 MobiDBLite consensus disorder prediction 77 92 - -
Cre06g2660 648 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 440 582 IPR032199 GO:0000166(InterPro)
Cre06g2660 648 MobiDBLite consensus disorder prediction 1 22 - -
Cre06g2660 648 Pfam RMI1, N-terminal helical domain 110 153 IPR049363 -
Cre06g2660 648 SMART DUF1767_2 103 196 - -
Cre06g2660 648 FunFam RecQ-mediated instability protein (DUF1767) 152 278 - -
Cre06g2660 648 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 100 584 - GO:0000712(PANTHER)|GO:0000724(PANTHER)|GO:0016604(PANTHER)|GO:0031422(PANTHER)
Cre06g2660 648 MobiDBLite consensus disorder prediction 24 50 - -
Cre06g2660 648 Gene3D - 152 277 IPR042470 -
Cre06g2660 648 MobiDBLite consensus disorder prediction 1 92 - -
Cre06g2660 648 MobiDBLite consensus disorder prediction 280 329 - -
Cre06g2660 648 Pfam RMI1, N-terminal OB-fold domain 161 272 IPR013894 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2660 K10990 - - csv:101222548 996.497
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g74 . . Bda06g00720 . . . . Bma12g01086 . . Cma10g00048 . Car10g00037 . Sed03g2779 . . Bhi02g00662 Tan09g2394 Cmetu02g0524 . . . . Cla06g01757 Cam06g1949 Cec06g1998 Cco06g2004 Clacu06g1906 Cmu06g1846 Cre06g2660 . . Cone13ag0234 Cone19ag0220 . . . . . Blo15g00201 . . Bpe07g00896 . . . . Cmo10g00043 . . . . . . . . . . . . . . . . . . . . . . Csa01g00040 Chy02g02679 Cme02g02082
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010501 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 0 1 1 3 1 31