Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2661 ATGGAAACCTCACAGCGGGAAACGAGTTATAGACGAGTTCCAGATGAACCAGAGCTCGATCTATACACCATTCCAAGTCACTCCAGTTGGTTTTCGTGGGACGAAATTCACGAAACGGAGAAATTAGCTTTGAAGGAGTTTTTTGATGGAAGCTCAATATCAAGAACGCCGCGCATATATAAAGAATATAGAGATTTTATTATCAATAAGTACAGGGAAGAGCCTTCCAGCAGGCTTACGTTCACCGAAATTCGGAAGTCTCTGGTGGGAGATGTTAATTTGCTTCATAAGGTGTTTATTTTCTTGGAGACATGGGGGCTGATCAACTTTGGCGCAACTTCGGATGACAATGTTTTGACGGAGGTGGAAGATGGAGAGAGTTCTATAATTAAGATTGAAGAGGGGGTCCCCAATGGGATTCGTGTGGGAGCAACGCCAAATTCGGTCAAGCCAATTTCAGCACCACCTGCTGTGGAAGACGGTGCTATTGTTAATGGGAGCGGGTTTAAATTGCCCCCTTTGACTTCTTATTCAGATGTTTTCAGTGACTTGTTGAAACAGAAGATGTTAGCGTGTGGGAACTGTGGCCAGCATCGTGGATCTAGATACCATCAATGCGCCAAGGATGGTTATTTAATCTGCGAAAACTGTTTCAATGATGGAAATTATGGGGAGCAGAGGCTTTCAGAAGATTTTGAGTTGAAGACCAACGAGTTCGTTGAAGATAGTAGCAATCCCGGAGCTGTGTGGACTGAGGCTGAAACTCTGCTTCTTTTGGAATCCGTTTTGAAGCATGGAGATGACTGGGAACTCGTTGCTCAAAATGTTCAAACCAAGACTAAATTGGATTGTATATTGAAGCTTGTAGAGTTGCCGTTTGGGGATTCCTTGTTATGCTCTGAAGCTCAAAGGAACGAGGTTAGTGGTTCCACTAACAACCTTACTAGTGAAAAGGAAATTACAGACGCTCCAACTAACAATCAGGAGATCGCCGGAAGTGAAGACCAATGTACCAAGGACATAAATGAGGACAAAGATGAAGAGAACCAAGGTCCTCCCAAGCGACAATGCACCGCTTATGTTCAAGATACGAGCAGTTCTCTGATGAAACAGGTAGCTTTGATATCAAGCATGGTTGGACCACATATTATGGCGGCAGCTGCTACTGCTTCTGTTACAGCACTTTGTGATGAAAACTTATATCCGAAAGAAATATTTGATGATCAAGATTTTTTTGTCCCTAATGGATTGTGTTCTGCGGCTTCCACCACAACAAATCATGAGATTGAGAGAATTCTCAATAACGAAGATTCAGTGGCAAAGGAAAGGCCTCCTCAATCAGGTGATGTAATGGCGGAGGACAAAGATGACATACCTTTAATCTTACGAGTTAGAGCTGCGATTGCAACAGCCCTTGGTGCTGCTGCAGCACGTTCAAAATTACTTGCTGATCAAGAAGAGAGAGAAATGGAATATTTATTGGCGATAATGATAGACGCACAGATGAAGAAGATGCAACGCAAAATTAAGCATTTTGAAGATCTCGAGCTGATTATGGAAACAGAATGTCCTGTGATTGAGGAACTAGAAGATAAACTGTTAATGGAGCGGGTTAGTGTCTTGCAATCTGCATTTGATCTTGGTATATCTAGGTGGAAGGATTATCCTTCTGTTAGATCTTGA 1683 42.6 METSQRETSYRRVPDEPELDLYTIPSHSSWFSWDEIHETEKLALKEFFDGSSISRTPRIYKEYRDFIINKYREEPSSRLTFTEIRKSLVGDVNLLHKVFIFLETWGLINFGATSDDNVLTEVEDGESSIIKIEEGVPNGIRVGATPNSVKPISAPPAVEDGAIVNGSGFKLPPLTSYSDVFSDLLKQKMLACGNCGQHRGSRYHQCAKDGYLICENCFNDGNYGEQRLSEDFELKTNEFVEDSSNPGAVWTEAETLLLLESVLKHGDDWELVAQNVQTKTKLDCILKLVELPFGDSLLCSEAQRNEVSGSTNNLTSEKEITDAPTNNQEIAGSEDQCTKDINEDKDEENQGPPKRQCTAYVQDTSSSLMKQVALISSMVGPHIMAAAATASVTALCDENLYPKEIFDDQDFFVPNGLCSAASTTTNHEIERILNNEDSVAKERPPQSGDVMAEDKDDIPLILRVRAAIATALGAAAARSKLLADQEEREMEYLLAIMIDAQMKKMQRKIKHFEDLELIMETECPVIEELEDKLLMERVSVLQSAFDLGISRWKDYPSVRS 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34164088 34166765 - CrPI670011_06g026610.1 Cre06g2661 502123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2661 560 SUPERFAMILY Homeodomain-like 20 114 IPR009057 -
Cre06g2661 560 Gene3D - 247 295 - -
Cre06g2661 560 Gene3D - 28 114 IPR036388 -
Cre06g2661 560 CDD SANT 250 287 IPR001005 -
Cre06g2661 560 SMART sant 246 294 IPR001005 -
Cre06g2661 560 SUPERFAMILY Homeodomain-like 246 292 IPR009057 -
Cre06g2661 560 Pfam SWIRM domain 32 110 IPR007526 GO:0005515(InterPro)
Cre06g2661 560 FunFam SWI/SNF complex subunit SMARCC2 isoform c 28 115 - -
Cre06g2661 560 MobiDBLite consensus disorder prediction 308 335 - -
Cre06g2661 560 Pfam Myb-like DNA-binding domain 250 288 IPR001005 -
Cre06g2661 560 Pfam SWIRM-associated region 1 470 543 IPR032451 -
Cre06g2661 560 ProSiteProfiles SANT domain profile. 249 296 IPR017884 -
Cre06g2661 560 PANTHER SWI/SNF COMPLEX-RELATED 41 544 - -
Cre06g2661 560 ProSiteProfiles SWIRM domain profile. 22 119 IPR007526 GO:0005515(InterPro)
Cre06g2661 560 ProSiteProfiles Myb-like domain profile. 250 284 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2661 K11649 - - csv:101222310 968.763
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2661 Cre-Chr6:34164088 Cre11g2300 Cre-Chr11:34612455 2.10E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009523 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33