Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2664 ATGGTTACGTGTAGCTCTGGTGATGTCAGGTTCACCGTCACCGTCGTTTTCCTCCGCCGAAACCTCTGTTCAAAACTGATACATCCGTGTCTGAGAGCGAAGGCATCGGCCTTTTGTCTTACTCGGCACGCACCCATGGAAACTAGTGTTAAGCAGGAACTTATTGAACCTTTACGCGCGCAAGGAACGAGCAACAATCCCGAGGCATCAAATGTGTCTCTCTCGTTTATTGAGCTCAGTAGTGACAGCGAGTCGGATTCGGAAGATTCGGAGCAAGAAGTAGTTGACGGAATTTTGGGAGAAGGTACGCGAAGCATCGGGCTCCCAAACGGCGTCGATGGAGGGTTCTCGAAGAAGAGGAGGCTGAACGAGTTGGAAGTTGTTAAACCTCTAGGTTTTCTTCCGCCCGCGGCGCTGGACGAGAAGAATTCCATGGCGGTTATTTTGCCCTCGTCAGCAGAGGCGTGTACTGGACAAGAGATGAGGACTTCGAACGCAAATGGTTCAGCCTGCAAACAGTTTTGGAAGGCAGGAGATTATGAAGGAGCTCCTTGCAGTAATTGGGATTCATCATCGGGTGGCATGGACCACGTTAGGGTTCACCCTAAGTTTCTGCATTCTAATGCGACCAGTCATAAGTGGGCTCTGGGAGCTTTTGCCGAGTTATTGGACAACTCGTTAGATGAGGTTTCCAACGGAGCTACTCATGTTAATATAGACATGCTTGTGAATAAGAAAGACGGGACCAAAATGTTATTAGTTGAAGATAATGGTGGTGGGATGAGCCCTGACAAAATGCGTCACTGCATGTCATTGGGTTATTCAGAGAAAACCAAATTAGCAAACACCATTGGACAATATGGTAATGGTTTTAAGACCAGTACCATGAGACTTGGAGCAGATGTAATTGTATTCTCACGTTGTGGTGGACAATATGGGAAAAGTGGCACACAGAGCATTGGATTACTATCCTATACATTTTTGAGAAGCACTGGAAAGGAGGATATCGTAGTTCCAATGCTTGACTATGAAAGGAAGGGAGGTGAATGGGCCAAGATAGTGCGATCTTCTCTTAGTGATTGGAACAAAAATGTGGAAACAATCGTTCAGTGGTCTCCGTTTTCTAATGAAGCTGAACTTCTCCGTCAGTTTTATTTGATGAAAGATCACGGAACTCGCATTATAATATATAACCTCTGGGAAGACGACCAGGGGCAGTTGGAGCTGGATTTTGATACTGACCAACATAGTTATGCATCCATTCTTTATTTGAGGCTCCCTCCTGGCTTTCGCATCATTCTTCGTGGGAGAGATGTAGAACACCATAACATTGTGAATGATATGATGATGTCTCAAGAGGTCACGTACAGACCTCAGCCAGGTGCTGAGGGGGTCGGCAAAGATACAAATATGGTTGCTGTTGTGACCATTGGGTTTGTGAAGGATGCAAAGCATCATATAGATGTTCAAGGATTCAATGTTTATCATAAGAATCGGCTCATCAAGCCGTTTTGGAGGCTTTGGAATGCTTCGGGAAGTGATGGTCGTGGAGTTATAGGTGTTCTAGAAGCAAATTTTGTTGAACCTGCCCACGATAAGCAGGGGTTTGAGCGAACAACTGTTCTTGCAAGACTTGAAGCACGGTTGATACAGATGCAGAAGACTTACTGGGGTTCCTACTGTCATAAGATTGGCTATGCTCCAAGACGAATTAATAAACCTGCCAATCCGTCTCCGGATAGAGAAAGTTCCCCGGATGATTATTCTTCCCAGGCTTCACCTCAATCAAAAAAGAAGTTTACTACATTAAGTGGGAAGAAACCTGATAAAGTCTATTCAGGCAAAGAATCAGAGAAGTTTCAGAAAACAAAGGACTTTAGATATGGGAATGTGCATTCAAGTAAAGACAAAAACAGTAGTATGACCCCTGACCCTGAGAAATCGGGGATAAGACCATGTTCCTCTGAGCCACCTTCACCTTCTGGACTAGAAGTTAGGGTTGATAATCCGCATGGAGGACAAGCAAACGGTACTGGCAATGAGACATTTCAGGGAAATGATGTTTCAATGACAATGAACGCGTCTTCAAATGGAGGTGTCAGTAAAGCTCAGCAAGGTGGATTGGGTAGAAGAGGACCCCAATTGAAGGGAGGAGATGTAAACGATAGCGAGCATTCCCTTTCAAGTTCCGATTTCCACATGCTACAGCAGTTGAAGGAAGAAAATAAAGAATTGAAGGAGAGATTACAGAGAAAGGAAGCTGATCACGACAAATTGCAGCATGAAAGAGAGAGGTGCAAATCACTTGAGGCTCAGCTTAAAGCAGCAGAGCTTAAAATTGAGGAATTGAATAAAGAACAAGAAAGCCTAATAGATATTTTCTCTGAAGAGAGAGATCGAAGAGAAACTGAGGAGCGAAATCTGCGAAAAAAGCTTCAGGGTAGTAAAAGTAGATTTAGGAATGGCGCATACGGTGTTCCTGCAAGGTAG 2490 44.5 MVTCSSGDVRFTVTVVFLRRNLCSKLIHPCLRAKASAFCLTRHAPMETSVKQELIEPLRAQGTSNNPEASNVSLSFIELSSDSESDSEDSEQEVVDGILGEGTRSIGLPNGVDGGFSKKRRLNELEVVKPLGFLPPAALDEKNSMAVILPSSAEACTGQEMRTSNANGSACKQFWKAGDYEGAPCSNWDSSSGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVSNGATHVNIDMLVNKKDGTKMLLVEDNGGGMSPDKMRHCMSLGYSEKTKLANTIGQYGNGFKTSTMRLGADVIVFSRCGGQYGKSGTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGGEWAKIVRSSLSDWNKNVETIVQWSPFSNEAELLRQFYLMKDHGTRIIIYNLWEDDQGQLELDFDTDQHSYASILYLRLPPGFRIILRGRDVEHHNIVNDMMMSQEVTYRPQPGAEGVGKDTNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKTYWGSYCHKIGYAPRRINKPANPSPDRESSPDDYSSQASPQSKKKFTTLSGKKPDKVYSGKESEKFQKTKDFRYGNVHSSKDKNSSMTPDPEKSGIRPCSSEPPSPSGLEVRVDNPHGGQANGTGNETFQGNDVSMTMNASSNGGVSKAQQGGLGRRGPQLKGGDVNDSEHSLSSSDFHMLQQLKEENKELKERLQRKEADHDKLQHERERCKSLEAQLKAAELKIEELNKEQESLIDIFSEERDRRETEERNLRKKLQGSKSRFRNGAYGVPAR 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34182887 34198624 + CrPI670011_06g026640.1 Cre06g2664 502126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2664 829 MobiDBLite consensus disorder prediction 673 703 - -
Cre06g2664 829 MobiDBLite consensus disorder prediction 736 763 - -
Cre06g2664 829 Coils Coil 732 800 - -
Cre06g2664 829 Gene3D - 202 422 IPR036890 -
Cre06g2664 829 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 217 337 - -
Cre06g2664 829 MobiDBLite consensus disorder prediction 795 829 - -
Cre06g2664 829 Pfam Morc6 ribosomal protein S5 domain 2-like 417 557 IPR041006 -
Cre06g2664 829 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 146 790 IPR045261 GO:0005634(PANTHER)|GO:0016887(InterPro)
Cre06g2664 829 MobiDBLite consensus disorder prediction 795 812 - -
Cre06g2664 829 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 217 442 IPR036890 -
Cre06g2664 829 MobiDBLite consensus disorder prediction 569 763 - -
Cre06g2664 829 MobiDBLite consensus disorder prediction 721 735 - -
Cre06g2664 829 MobiDBLite consensus disorder prediction 577 601 - -
Cre06g2664 829 FunFam MORC family CW-type zinc finger protein 4 201 405 - -
Cre06g2664 829 MobiDBLite consensus disorder prediction 602 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2664 K24135 - - csv:101222073 1275.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2664 Cre-Chr6:34182887 Cre07g1890 Cre-Chr7:34347287 6.00E-149 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g69 . . . . . . . . . . . Cma11g00020 . Car11g00019 . . Cpe04g01628 Bhi02g00471 . . . Hepe09g0031 . . Cla06g01760 Cam06g1953 Cec06g2003 Cco06g2008 Clacu06g1911 Cmu06g1851 Cre06g2664 . . Cone13ag0239 . . . . . . . . Bda14g01346 . Bpe15g00232 Bma03g01239 . . . Cmo11g00020 . . . . . . . . . . . . . . . . . . . . Lsi06g01658 Csa01g00034 . Cme02g02086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002795 1 2 1 1 1 2 1 2 2 2 2 2 1 2 3 1 2 1 1 2 2 1 2 3 2 1 2 4 3 2 54