Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2687 ATGGCCTCCTCCGAGGTTTCGATCAACCCCAATTCCGCCTCCTTCAACGACCATGCCGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTGCCAGGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGCCCTCTCGTTTCGGTTCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACAAGTCAAGTGGCAGACCAGCAGATGCCTGTATATAACCTTCCATGGAAGATCCTCTGCCGCGTTATTAATGTGCACTTAAAGGCCGAACCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGAATGCTGTGGACAAGGAACCCCCACCTCCTCCCCCGCGGAGATTTCATGTGCATTCCTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACTCAGGAGTTGGTTGCAAAGGATTTGCATGGAACAGAATGGCGTTTTCGTCATATATTTCGAGGGCAACCGCGTAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTAAGGCGTGCCATGAGACAACATGGCAACGTCCCATCATCAGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCTATTTCCACAGGCACGATGTTCACTGTCTACTATAAACCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAACAGAGATTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGACGAGACTTCTACTATTTCTCGTCCGGAGAAAGTTTCACCATGGAAAATTGAGCCTGCCCTTGCTCCTCCTGCACTGAACCCCCTTCCTATGACTAGACCTAAGAGGCCTCGATCAAATATGGTATCTACATCCCCCGATTCCTCTGTTCTTACACGAGAAGGTTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATCGATAGTAATGATCCAGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACTTATGCCGATCTTCTGTCAGGTTTTGGAACTAATATTGATTCATCTCATGGTGTTCGAGCTGGCATGGGAGATTCAGCAGTAGTCACTGTTAATTCAATCAGAAAGCATGCCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGCCTTGCCTTCTGGTCTCTCGCTCAACCTGGTTGACTCTAGTCAGAGGGGTCATATTCAGGCTGGTGACTTATCTTATCAAGGGAGAGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCATGGCCCATTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGACTATCCAGTTCATTCAACTGAACTGATGTCAAAACCTATATTATTTCAGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCAATAAAAATCCTGCCATTCCAGACCCTGCAGGACTGAGTAGAAATATGATGAACGAGGCAGCAGATGTTATGCATCCTAATATACATCAAATCCATTCAAACGAGTCTGACCTGAAGGCTGAACTATCTAGAGGTTCAAAATTGGCTGATAAATCCCTTGCCATCAATGAGGCTGATAAGTTGCAGCAACCATGCGCACATAACTCGAAGGACACACACAGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGTGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTGATGAGAATCCATCCATTGAAGGGGAAGAAGCAAAAGAGATCAAAAGTCAGGCAGTACCTTCGATGTCAGTACCCGAGAGTTTTTGGTGCGGTACGGAAGGAGTTGAGCAGAGTAATGCAGCGAGGCCGGAAGGTTGCGGCCTTATGTTAAAGGTAGATGGTAGAAATGATGTATTGAATTTTGGACGTGCAAGCAGAAGAAGAGAACACGCTGACACGAATGGAAATTTGTTCAAAATGGGATTGCAACATGAAGCTGCTACTGCTTCTTGGATTTCGCTACTTGAAAGCGAAGGGGGTCAATGCCATGCAAATATCTCGAATAAATTGTTTTTAAAATCAAAGTATATCCGTTGCGTAGAAGTCTACGACGTTCCGCCGCTGACACTGTCGCCGTTTATAGTCGTCGGTAAGTCAGTGGATATCATGGCTAGAGTTCTGGTTCAGTCGACAAATATTCCTGGTTTGGTCGGTGGAAGAAAGAATGGCCTATCATCAAGGGGGTCAGCAAATGTAAAACGGGTTGTTAAAATGATGGCCACCGTACATGCACCTGGTTTGGCAATAAGAAGTTTCTCTGGACTCAGGGGATTTAATTCTTTGGATAACATGTTGAGAACTGGACAAAATTTTCATTCTAAGATGGCCATTACAATCTCTTCTAGGCGACGAAAGGCTAGCAGGTGTGTTCCAAGAGCTATGTTTGAGCGGTTCACAGAAAAGGCAATTAAAGTCATCATGCTTGCCCAGGAGGAAGCGAGGCGGCTTGGTCACAATTTTGTTGGCACAGAGCAGATACTTTTAGGTCTTATTGGCGAAGGCACTGGCATCGCTGCTAAAGTTCTTAAATCTATGGGAATTAATCTTAAAGATGCGCGCGTGGAGGTGGAGAAGATAATTGGTAGGGGCAGCGGCTTTGTTGCTGTAGAAATTCCATTCACTCCTCGGGCAAAGCGTGTTTTGGAACTTTCTCTTGAAGAAGCTCGCCAACTTGGCCACAATTATATCGGGTCAGAGCACTTGCTTCTGGGACTACTTCGTGAAGGTGAGGGCGTCGCAGCTCGTGTTCTCGAAAACCTAGGTGCTGATCCTAGTAACATTCGCACTCAGGTAATTAGAATGGTTGGTGAGAGTACGGAGGCTGTTGGTGCTGGTGTTGGAGGAGGAAGCAGTGGGAACAAGATGCCAACCCTGGAAGAGTATGGCACAAATTTAACTAAGCTGGCTGAAGAGGGTAAACTAGATCCTGTTGTTGGAAGGCAGCAGCAAATAGAACGTGTAACCCAGATTTTGGGTCGGCGGACAAAAAATAATCCTTGCCTCATTGGTGAGCCTGGTGTTGGGAAAACTGCTATTGCTGAAGGTCTGGCACAAAGGATTGCTAATGGGGATGTCCCTGAAACAATAGAAGGAAAGAAGGTTATAACCCTGGATATGGGCCTTCTCGTAGCTGGCACAAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTGATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTTATTGATGAGGTGCACACATTAATTGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAATATATTGAAACCTGCCCTCGCAAGAGGTGAACTGCAGTGCATTGGAGCCACGACATTGGATGAATACAGGAAGCACATTGAAAAAGACCCAGCCTTAGAAAGGAGATTTCAGCCAGTCAAAGTGCCGGAACCATCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGGGAGCGGTATGAAATCCACCACAAACTTCGTTACACAGATGAAGCACTAGTAGCTGCTGCGCAGCTGTCATACCAGTACATCAGTGATCGGTTCTTGCCTGATAAGGCAATCGACTTGGTTGATGAAGCAGGTTCTCGGGTTCGCCTGCGTCATGCTCAACTACCTGAGGAAGCCAGGGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTCGAAGTCAAGACTTTGAGAAGGCTGGAGAATTGCGTGACAGAGAAATGGAACTTAAGACTAAGATCTCTGCTCTAGTAGACAAGGGCAAGGAGATGAGCAAGGCTGAAAGCGAGGCAGGAGATGTAGGCCCTGTTGTGACTGAGGTCGATATTCAGCATATTGTCTCCTCCTGGACTGGCATTCCTGTCGAGAAAGTATCTACTGACGAATCTGATCGCCTCCTCAAAATGGAAGAGACCCTCCATAAGAGGGTCATTGGTCAAGATGAAGCAGTTAAAGCCATCAGCCGTGCCATACGGCGAGCTCGGGTTGGTCTGAAGAATCCCAATCGTCCAATTGCAAGCTTTATATTTTCTGGTCCAACTGGTGTTGGTAAATCTGAGTTAGCAAAAGCGTTGGCTGCATACTATTTTGGGTCTGAAGAAGCAATGATTCGCCTTGACATGAGTGAATTTATGGAGAGGCATACTGTCTCCAAGCTCATTGGTTCCCCTCCTGGTTATGTTGGTTACACGGAGGGTGGTCAATTAACTGAGGCTGTTCGTCGTCGTCCATACACAGTGGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTGTTCAACATGATGCTTCAAATTTTAGAGGATGGAAGGTTGACAGATAGCAAGGGCAGGACTGTAGACTTCAAAAATACACTTTTGATAATGACATCAAATGTGGGAAGCAGTGTTATAGAGAAGGGAGGTCGCAGAATAGGGTTTGACCTTGATTATGACGAGAAGGATAGTAGTTACAACCGGATCAAGAGCTTGGTGACAGAGGAACTGAAACAATACTTCAGGCCTGAGTTTTTGAATAGGTTGGATGAGATGATTGTCTTCCGTCAGCTCACAAAACTGGAGGTGAAGGAGATTGCGGATATAATGCTGAAGGAGGTATTCGATAGGTTAAAAGCAAAAGAAATAGACCTTCAAGTGACAGAAAGATTTAGGGATAGGGTGGTGGAGGAAGGATATAACCCAAGCTACGGTGCGAGACCATTGAGAAGGGCAATAATGAGACTTTTGGAGGACAGCATGGCAGAGAAGATGCTGGCAAGGGAGATCAAGGAGGGTGACTCGGTAATAGTTGATGTCGATTCAGACGGAAACGTCACAGTGCTCAATGGCAGCAGCGGTGCTCCCGAGTCCCTGCCGGATGCCATCCCCGTGTAA 5664 45.97 MASSEVSINPNSASFNDHADSTKDTSDPPNALSARDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPWKILCRVINVHLKAEPDTDEVFAQITLLPEANQDENAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVSTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDSNDPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGTNIDSSHGVRAGMGDSAVVTVNSIRKHAMDQDGKFNFLGGSSWSALPSGLSLNLVDSSQRGHIQAGDLSYQGRGNATFNGFGDHSMAHCHRTEQPHGNWLMPPPSSHFDYPVHSTELMSKPILFQNQDILKPKDGNCKLFGISLNKNPAIPDPAGLSRNMMNEAADVMHPNIHQIHSNESDLKAELSRGSKLADKSLAINEADKLQQPCAHNSKDTHSKSQGTSARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGDENPSIEGEEAKEIKSQAVPSMSVPESFWCGTEGVEQSNAARPEGCGLMLKVDGRNDVLNFGRASRRREHADTNGNLFKMGLQHEAATASWISLLESEGGQCHANISNKLFLKSKYIRCVEVYDVPPLTLSPFIVVGKSVDIMARVLVQSTNIPGLVGGRKNGLSSRGSANVKRVVKMMATVHAPGLAIRSFSGLRGFNSLDNMLRTGQNFHSKMAITISSRRRKASRCVPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMELKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKEIDLQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAIPV 1887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34327108 34344287 - CrPI670011_06g026870.1 Cre06g2687 502149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2687 1887 Pfam Auxin response factor 273 355 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre06g2687 1887 ProSitePatterns Chaperonins clpA/B signature 2. 1634 1652 IPR028299 -
Cre06g2687 1887 MobiDBLite consensus disorder prediction 1 29 - -
Cre06g2687 1887 PANTHER ATP-DEPENDENT CLP PROTEASE 1058 1867 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Cre06g2687 1887 SMART ClpB_D2_small_2 1780 1870 IPR019489 -
Cre06g2687 1887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1549 1866 IPR027417 -
Cre06g2687 1887 Pfam AAA domain (Cdc48 subfamily) 1599 1773 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre06g2687 1887 ProSitePatterns Chaperonins clpA/B signature 1. 1352 1364 IPR018368 GO:0005524(InterPro)
Cre06g2687 1887 Gene3D - 1211 1400 IPR027417 -
Cre06g2687 1887 MobiDBLite consensus disorder prediction 395 421 - -
Cre06g2687 1887 SMART AAA_5 1257 1397 IPR003593 GO:0016887(InterPro)
Cre06g2687 1887 SMART AAA_5 1600 1781 IPR003593 GO:0016887(InterPro)
Cre06g2687 1887 SUPERFAMILY DNA-binding pseudobarrel domain 144 276 IPR015300 -
Cre06g2687 1887 Gene3D - 1402 1546 - -
Cre06g2687 1887 Gene3D - 721 814 - -
Cre06g2687 1887 CDD B3_DNA 145 247 IPR003340 GO:0003677(InterPro)
Cre06g2687 1887 ProSiteProfiles PB1 domain profile. 725 809 IPR053793 -
Cre06g2687 1887 MobiDBLite consensus disorder prediction 706 726 - -
Cre06g2687 1887 Pfam AUX/IAA family 770 813 IPR033389 -
Cre06g2687 1887 Gene3D - 1552 1778 IPR027417 -
Cre06g2687 1887 MobiDBLite consensus disorder prediction 1 31 - -
Cre06g2687 1887 Gene3D - 1780 1876 - -
Cre06g2687 1887 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1711 1725 IPR001270 GO:0005524(InterPro)
Cre06g2687 1887 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1604 1622 IPR001270 GO:0005524(InterPro)
Cre06g2687 1887 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1649 1667 IPR001270 GO:0005524(InterPro)
Cre06g2687 1887 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1678 1696 IPR001270 GO:0005524(InterPro)
Cre06g2687 1887 ProSiteProfiles UVR domain profile. 1474 1509 IPR001943 GO:0005515(InterPro)
Cre06g2687 1887 FunFam ATP-dependent chaperone ClpB 1780 1872 - -
Cre06g2687 1887 FunFam ATP-dependent Clp protease subunit 1553 1778 - -
Cre06g2687 1887 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 1056 1204 - -
Cre06g2687 1887 Pfam C-terminal, D2-small domain, of ClpB protein 1780 1860 IPR019489 -
Cre06g2687 1887 SMART B3_2 147 249 IPR003340 GO:0003677(InterPro)
Cre06g2687 1887 Coils Coil 1311 1331 - -
Cre06g2687 1887 Gene3D UVR domain 1466 1530 - -
Cre06g2687 1887 Gene3D - 1056 1204 IPR036628 -
Cre06g2687 1887 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677(InterPro)
Cre06g2687 1887 FunFam Auxin response factor 720 814 - -
Cre06g2687 1887 MobiDBLite consensus disorder prediction 381 421 - -
Cre06g2687 1887 CDD RecA-like_ClpB_Hsp104-like 1561 1777 - -
Cre06g2687 1887 CDD AAA 1240 1392 - -
Cre06g2687 1887 Pfam ATPase family associated with various cellular activities (AAA) 1262 1374 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre06g2687 1887 FunFam Chaperone clpB 1, putative 1190 1400 - -
Cre06g2687 1887 SUPERFAMILY Double Clp-N motif 1058 1199 IPR036628 -
Cre06g2687 1887 FunFam Auxin response factor 310 382 - -
Cre06g2687 1887 Gene3D - 310 380 - -
Cre06g2687 1887 FunFam Auxin response factor 145 249 - -
Cre06g2687 1887 FunFam ATP-dependent Clp protease ATP-binding subunit 1401 1485 - -
Cre06g2687 1887 Pfam Clp amino terminal domain, pathogenicity island component 1147 1198 IPR004176 -
Cre06g2687 1887 Pfam Clp amino terminal domain, pathogenicity island component 1071 1123 IPR004176 -
Cre06g2687 1887 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677(InterPro)
Cre06g2687 1887 Gene3D - 144 249 IPR015300 -
Cre06g2687 1887 Coils Coil 1463 1490 - -
Cre06g2687 1887 ProSiteProfiles Clp repeat (R) domain profile. 1057 1199 IPR004176 -
Cre06g2687 1887 Pfam AAA lid domain 1400 1501 IPR041546 -
Cre06g2687 1887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1217 1499 IPR027417 -
Cre06g2687 1887 SUPERFAMILY CAD & PB1 domains 722 802 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0300 Cre-Chr1:2399215 Cre06g2687 Cre-Chr6:34327108 5.10E-203 dispersed
Cre02g2408 Cre-Chr2:37450912 Cre06g2687 Cre-Chr6:34327108 1.20E-138 dispersed
Cre03g0484 Cre-Chr3:3304571 Cre06g2687 Cre-Chr6:34327108 0.00E+00 dispersed
Cre04g1948 Cre-Chr4:36969652 Cre06g2687 Cre-Chr6:34327108 3.60E-97 dispersed
Cre05g0927 Cre-Chr5:8472403 Cre06g2687 Cre-Chr6:34327108 4.60E-14 dispersed
Cre05g1805 Cre-Chr5:30094429 Cre06g2687 Cre-Chr6:34327108 1.10E-202 dispersed
Cre06g2434 Cre-Chr6:32199289 Cre06g2687 Cre-Chr6:34327108 2.40E-157 dispersed
Cre06g2687 Cre-Chr6:34327108 Cre11g0526 Cre-Chr11:2250320 6.90E-177 dispersed
Cre06g2687 Cre-Chr6:34327108 Cre01g1523 Cre-Chr1:28453494 1.10E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53968 PF07724 AAA_2 7.10E-55 CL0023 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2687 K03696 - csv:101207083 1706.03