Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2693 ATGTCAGCCATGGTTTGTGCGTTAGGTGAAGTGATAAGGAGTGGGAGTAGCAAAAGCCCAGCGGTAGTTGAAGCAGATTATTGGCCAGAATCGGAATCGCAATCGCAGCGAGCAGATCATGAAGAAGAAGTGAAAAGAGAGAGTCGGCATTATCGAGGAGTAAGACAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGCTAGGCACCTTCGACACTGCTGAGGCTGCAGCACTTGCTTACGATGAAGCTGCCCTTAGATTCAAAGGCACAAAAGCCAAGCTCAACTTCCCTGAGAGGCTCACCACTCCACCCTCCTATGCCTATCATCATCCCACCTTTATGCTCAATCTCCACTCCTCAACTTCTCATCCTTCCCATCATCAGGACCACAAAAATTAA 429 48.95 MSAMVCALGEVIRSGSSKSPAVVEADYWPESESQSQRADHEEEVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYAYHHPTFMLNLHSSTSHPSHHQDHKN 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34380285 34380713 + CrPI670011_06g026930.1 Cre06g2693 502155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2693 142 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2693 142 MobiDBLite consensus disorder prediction 28 51 - -
Cre06g2693 142 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Cre06g2693 142 Pfam AP2 domain 50 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2693 142 MobiDBLite consensus disorder prediction 33 51 - -
Cre06g2693 142 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677(InterPro)
Cre06g2693 142 CDD AP2 50 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2693 142 PANTHER DNA-BINDING DOMAIN 33 125 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cre06g2693 142 SMART rav1_2 50 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2693 142 Gene3D AP2/ERF domain 49 109 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2693 142 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2693 142 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2693 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0950 Cre-Chr2:6713247 Cre06g2693 Cre-Chr6:34380285 1.50E-25 dispersed
Cre05g1178 Cre-Chr5:11373498 Cre06g2693 Cre-Chr6:34380285 1.30E-23 dispersed
Cre06g2693 Cre-Chr6:34380285 Cre08g0658 Cre-Chr8:19541764 6.40E-27 dispersed
Cre06g2693 Cre-Chr6:34380285 Cre06g0938 Cre-Chr6:2771490 2.10E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g17 . . . . . . . . . . Cma10g00010 . Car10g00007 . Sed14g0033 . . Bhi02g00606 Tan09g2439 Cmetu02g1402 . . . . Cla06g01787 Cam06g1985 Cec06g2035 Cco06g2043 Clacu06g1942 Cmu06g1882 Cre06g2693 . . Cone13ag0267 Cone19ag0251 . . . . . . . . . . . . . Cmo10g00008 . . . . . . . . . . . . . . . . . . . . . Lsi06g01687 Csa01g00006 . Cme02g02116
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53969 PF00847 AP2 2.10E-15 CL0081 Cre TF