Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0431 ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCACCCAAGGCAGAAGTACTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTGCACCTTATCTTCGTAAGGATGTTTGTTGAATCTTGCAAGCGTGTACGCATAATGAAAGGAAAGGAAGCCATTGGCCTTGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACATAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATTTGGGAAGGATGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACGATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGACATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGCAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTCGATTTAGTGAAAGCAAAAGTAGATAAAATTGGTCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTGTTAGTGTCAACCAAAACAAAGGAGCTCATCGGAACGCTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCTGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGACGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATTTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGTGGCTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGAGTTGAGGTACGTGGTTGAAGTTTTTGATTCTTTTTGGGGTATGGCGAATCGGGTTGTTAAAGTGAAGAGGGAAGCCATTGCAGCATGCATAACTTGCCCACTTTGTAATAAGCTCTTGAAAGAAGCAACCACCATTTCTGAATGTCTTCATACTTTTTGCAGAAAGTGCATATCCGATAAGATTTCTGATGAGGAACTAGAAAACTGTCCAGTATGTAATATTGACCTCGGGTGTGTCCCACTGGAGAAATTAAGGCCAGACCACAATCTAGAAGATTTAAGGGCCAAGATTTTCCCTAGTAAAAGGAGAAAATTCAAGACGCCGGAAGTTGCTCCTGTTATTCTACCACCAGTTAGAAGAAAGGAAAGATCACTTTCCTCATTGGTGGTCAATAGTCCAAGAGTGTCAAGTCATGCTACCGCAACTGGAAGAAGAACAGCAGCTGCTGCTGCAAGAATCGGTTCTATTTTACGAACACCAAGAGTCTCTTCTGAGAAGCGAGTGAAGAAAGAGGATGATTCCATGGACGACGGTTCAGAGAGCTCAAGTTCTCTTGAGACATCAGACAAATTCAATCAGAATAAAAGGCCGGATTCCAGTCCTACCAAGTCGACCATACCTTTGCGCAATAAAGAAGCTGAAAATGGTGTTAACTCAGTGGAAGGGAACTTGGATATCTGGAAACCTCTAAATTTCTTAGTTGAGGTTGCAAATAGGAGTAAATGTTCCAAATCTAATTCACAAGGATTCGAAACTAAAGTCGAGCCTGGAGAAGTCGATGGAAGTGAAGCTCAGGCCAGCAAATCTAGAAATAGGGAAGGCAAACGCAAGCAAAAACGTGAGAATGGAAAAACTAGAGCAGACCCAGTATCTCCAGAAACTGAAAAACCTAAGAAACTGCGTAGGGTCCGCCAGAAAAGGGAATCTTTTTATGGGGACTCCAGCCTTACACCTCAGGTTGTGTTGGATGCCTCTAGTGCTCGGCATGAAAGAAAAGCCGGTCCGATTTGGCTCTCACTCATAGCCTCTGATCAGGAAGGAGATGTATCGTTGCCCCAAATTCCTGCTAAGTATTTGAGAATAAAGGATAGAAACTTGCCAGTATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCTCCCAAGTGAATCAGAGGTTGAAGTCAAGTGTATGGGACATCCAGTAGTTCCCACTCTGGATTTGCATAGTTTAGTTGATTTGTGGCTACAAACAGCATCAACCTCCGAAAAGATCCCGGCATCGATCGGCTCATCGGCAGAGGATTTCATTATGGTTCTCTACTATGCTAGAAAGATCACAGTTTCTTGA 4641 42.38 MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPPKAEVLVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVHLIFVRMFVESCKRVRIMKGKEAIGLGADWKMSLISQNVAVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKEHKKEDEQQKEIKKLENFLFGSLYSPVEFGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDDDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTTKKKNTAISTSWVSLDHEGRSTILDLDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKELRYVVEVFDSFWGMANRVVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCISDKISDEELENCPVCNIDLGCVPLEKLRPDHNLEDLRAKIFPSKRRKFKTPEVAPVILPPVRRKERSLSSLVVNSPRVSSHATATGRRTAAAAARIGSILRTPRVSSEKRVKKEDDSMDDGSESSSSLETSDKFNQNKRPDSSPTKSTIPLRNKEAENGVNSVEGNLDIWKPLNFLVEVANRSKCSKSNSQGFETKVEPGEVDGSEAQASKSRNREGKRKQKRENGKTRADPVSPETEKPKKLRRVRQKRESFYGDSSLTPQVVLDASSARHERKAGPIWLSLIASDQEGDVSLPQIPAKYLRIKDRNLPVSFVQKYLMRKLDLPSESEVEVKCMGHPVVPTLDLHSLVDLWLQTASTSEKIPASIGSSAEDFIMVLYYARKITVS 1546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1999281 2022513 + CrPI670011_07g004310.1 Cre07g0431 503012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0431 1546 MobiDBLite consensus disorder prediction 1 38 - -
Cre07g0431 1546 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 526 561 - -
Cre07g0431 1546 MobiDBLite consensus disorder prediction 1368 1402 - -
Cre07g0431 1546 SMART ring_2 1135 1175 IPR001841 -
Cre07g0431 1546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1118 1221 IPR013083 -
Cre07g0431 1546 MobiDBLite consensus disorder prediction 163 180 - -
Cre07g0431 1546 MobiDBLite consensus disorder prediction 321 346 - -
Cre07g0431 1546 MobiDBLite consensus disorder prediction 181 199 - -
Cre07g0431 1546 Pfam AUX/IAA family 5 109 IPR033389 -
Cre07g0431 1546 MobiDBLite consensus disorder prediction 163 199 - -
Cre07g0431 1546 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 1043 1094 IPR045863 -
Cre07g0431 1546 Pfam Magnesium transporter MRS2-like 759 1034 - -
Cre07g0431 1546 MobiDBLite consensus disorder prediction 835 858 - -
Cre07g0431 1546 PANTHER WD-REPEAT PROTEIN-RELATED 183 690 IPR045161 GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER)
Cre07g0431 1546 FunFam Magnesium transporter MRS2-1 734 818 - -
Cre07g0431 1546 Pfam Zinc finger, C3HC4 type (RING finger) 1135 1175 - -
Cre07g0431 1546 ProSiteProfiles Zinc finger RING-type profile. 1135 1176 IPR001841 -
Cre07g0431 1546 Coils Coil 910 937 - -
Cre07g0431 1546 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 567 IPR001680 GO:0005515(InterPro)
Cre07g0431 1546 SMART WD40_4 388 428 IPR001680 GO:0005515(InterPro)
Cre07g0431 1546 SMART WD40_4 561 601 IPR001680 GO:0005515(InterPro)
Cre07g0431 1546 SMART WD40_4 520 558 IPR001680 GO:0005515(InterPro)
Cre07g0431 1546 Gene3D Magnesium transport protein CorA, transmembrane region 822 1037 - -
Cre07g0431 1546 MobiDBLite consensus disorder prediction 1263 1317 - -
Cre07g0431 1546 CDD RING-HC_PCGF 1133 1176 - -
Cre07g0431 1546 ProSitePatterns Zinc finger RING-type signature. 1151 1160 IPR017907 -
Cre07g0431 1546 MobiDBLite consensus disorder prediction 1344 1411 - -
Cre07g0431 1546 Gene3D - 1420 1524 - -
Cre07g0431 1546 CDD Mrs2_Mfm1p-like 747 1104 IPR039204 -
Cre07g0431 1546 SUPERFAMILY RING/U-box 1131 1200 - -
Cre07g0431 1546 Gene3D - 378 692 IPR015943 GO:0005515(InterPro)
Cre07g0431 1546 MobiDBLite consensus disorder prediction 1265 1280 - -
Cre07g0431 1546 SUPERFAMILY WD40 repeat-like 399 690 IPR036322 GO:0005515(InterPro)
Cre07g0431 1546 FunFam U3 small nucleolar RNA-associated protein 18 homolog 379 693 - -
Cre07g0431 1546 Pfam WD domain, G-beta repeat 523 558 IPR001680 GO:0005515(InterPro)
Cre07g0431 1546 Coils Coil 181 201 - -
Cre07g0431 1546 Gene3D - 730 818 - -
Cre07g0431 1546 MobiDBLite consensus disorder prediction 1283 1315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1987 Cre-Chr2:33311962 Cre07g0431 Cre-Chr7:1999281 9.80E-114 dispersed
Cre06g0944 Cre-Chr6:2853748 Cre07g0431 Cre-Chr7:1999281 1.90E-08 dispersed
Cre07g0431 Cre-Chr7:1999281 Cre10g1438 Cre-Chr10:28110223 3.50E-86 dispersed
Cre02g0369 Cre-Chr2:810395 Cre07g0431 Cre-Chr7:1999281 9.60E-81 transposed
Cre02g1542 Cre-Chr2:27763806 Cre07g0431 Cre-Chr7:1999281 5.00E-268 transposed
Cre08g0982 Cre-Chr8:22943810 Cre07g0431 Cre-Chr7:1999281 1.60E-64 transposed
Cre05g0571 Cre-Chr5:5032320 Cre07g0431 Cre-Chr7:1999281 2.50E-60 wgd
Cre06g1415 Cre-Chr6:8444609 Cre07g0431 Cre-Chr7:1999281 9.30E-145 wgd
Cre07g0431 Cre-Chr7:1999281 Cre09g0709 Cre-Chr9:6850629 1.30E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53974 PF02309 AUX_IAA 4.40E-07 CL0072 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0431 K14553 - csv:101208908 930.243