Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g0431 | ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCACCCAAGGCAGAAGTACTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTGCACCTTATCTTCGTAAGGATGTTTGTTGAATCTTGCAAGCGTGTACGCATAATGAAAGGAAAGGAAGCCATTGGCCTTGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACATAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATTTGGGAAGGATGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACGATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGACATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGCAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTCGATTTAGTGAAAGCAAAAGTAGATAAAATTGGTCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTGTTAGTGTCAACCAAAACAAAGGAGCTCATCGGAACGCTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCTGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGACGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATTTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGTGGCTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGAGTTGAGGTACGTGGTTGAAGTTTTTGATTCTTTTTGGGGTATGGCGAATCGGGTTGTTAAAGTGAAGAGGGAAGCCATTGCAGCATGCATAACTTGCCCACTTTGTAATAAGCTCTTGAAAGAAGCAACCACCATTTCTGAATGTCTTCATACTTTTTGCAGAAAGTGCATATCCGATAAGATTTCTGATGAGGAACTAGAAAACTGTCCAGTATGTAATATTGACCTCGGGTGTGTCCCACTGGAGAAATTAAGGCCAGACCACAATCTAGAAGATTTAAGGGCCAAGATTTTCCCTAGTAAAAGGAGAAAATTCAAGACGCCGGAAGTTGCTCCTGTTATTCTACCACCAGTTAGAAGAAAGGAAAGATCACTTTCCTCATTGGTGGTCAATAGTCCAAGAGTGTCAAGTCATGCTACCGCAACTGGAAGAAGAACAGCAGCTGCTGCTGCAAGAATCGGTTCTATTTTACGAACACCAAGAGTCTCTTCTGAGAAGCGAGTGAAGAAAGAGGATGATTCCATGGACGACGGTTCAGAGAGCTCAAGTTCTCTTGAGACATCAGACAAATTCAATCAGAATAAAAGGCCGGATTCCAGTCCTACCAAGTCGACCATACCTTTGCGCAATAAAGAAGCTGAAAATGGTGTTAACTCAGTGGAAGGGAACTTGGATATCTGGAAACCTCTAAATTTCTTAGTTGAGGTTGCAAATAGGAGTAAATGTTCCAAATCTAATTCACAAGGATTCGAAACTAAAGTCGAGCCTGGAGAAGTCGATGGAAGTGAAGCTCAGGCCAGCAAATCTAGAAATAGGGAAGGCAAACGCAAGCAAAAACGTGAGAATGGAAAAACTAGAGCAGACCCAGTATCTCCAGAAACTGAAAAACCTAAGAAACTGCGTAGGGTCCGCCAGAAAAGGGAATCTTTTTATGGGGACTCCAGCCTTACACCTCAGGTTGTGTTGGATGCCTCTAGTGCTCGGCATGAAAGAAAAGCCGGTCCGATTTGGCTCTCACTCATAGCCTCTGATCAGGAAGGAGATGTATCGTTGCCCCAAATTCCTGCTAAGTATTTGAGAATAAAGGATAGAAACTTGCCAGTATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCTCCCAAGTGAATCAGAGGTTGAAGTCAAGTGTATGGGACATCCAGTAGTTCCCACTCTGGATTTGCATAGTTTAGTTGATTTGTGGCTACAAACAGCATCAACCTCCGAAAAGATCCCGGCATCGATCGGCTCATCGGCAGAGGATTTCATTATGGTTCTCTACTATGCTAGAAAGATCACAGTTTCTTGA | 4641 | 42.38 | MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPPKAEVLVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVHLIFVRMFVESCKRVRIMKGKEAIGLGADWKMSLISQNVAVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKEHKKEDEQQKEIKKLENFLFGSLYSPVEFGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDDDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTTKKKNTAISTSWVSLDHEGRSTILDLDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKELRYVVEVFDSFWGMANRVVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCISDKISDEELENCPVCNIDLGCVPLEKLRPDHNLEDLRAKIFPSKRRKFKTPEVAPVILPPVRRKERSLSSLVVNSPRVSSHATATGRRTAAAAARIGSILRTPRVSSEKRVKKEDDSMDDGSESSSSLETSDKFNQNKRPDSSPTKSTIPLRNKEAENGVNSVEGNLDIWKPLNFLVEVANRSKCSKSNSQGFETKVEPGEVDGSEAQASKSRNREGKRKQKRENGKTRADPVSPETEKPKKLRRVRQKRESFYGDSSLTPQVVLDASSARHERKAGPIWLSLIASDQEGDVSLPQIPAKYLRIKDRNLPVSFVQKYLMRKLDLPSESEVEVKCMGHPVVPTLDLHSLVDLWLQTASTSEKIPASIGSSAEDFIMVLYYARKITVS | 1546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1999281 | 2022513 | + | CrPI670011_07g004310.1 | Cre07g0431 | 503012 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Cre07g0431 | 1546 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 526 | 561 | - | - | |
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 1368 | 1402 | - | - | |
Cre07g0431 | 1546 | SMART | ring_2 | 1135 | 1175 | IPR001841 | - | |
Cre07g0431 | 1546 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1118 | 1221 | IPR013083 | - | |
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 163 | 180 | - | - | |
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 321 | 346 | - | - | |
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 181 | 199 | - | - | |
Cre07g0431 | 1546 | Pfam | AUX/IAA family | 5 | 109 | IPR033389 | - | |
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 163 | 199 | - | - | |
Cre07g0431 | 1546 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 1043 | 1094 | IPR045863 | - | |
Cre07g0431 | 1546 | Pfam | Magnesium transporter MRS2-like | 759 | 1034 | - | - | |
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 835 | 858 | - | - | |
Cre07g0431 | 1546 | PANTHER | WD-REPEAT PROTEIN-RELATED | 183 | 690 | IPR045161 | GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER) | |
Cre07g0431 | 1546 | FunFam | Magnesium transporter MRS2-1 | 734 | 818 | - | - | |
Cre07g0431 | 1546 | Pfam | Zinc finger, C3HC4 type (RING finger) | 1135 | 1175 | - | - | |
Cre07g0431 | 1546 | ProSiteProfiles | Zinc finger RING-type profile. | 1135 | 1176 | IPR001841 | - | |
Cre07g0431 | 1546 | Coils | Coil | 910 | 937 | - | - | |
Cre07g0431 | 1546 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 526 | 567 | IPR001680 | GO:0005515(InterPro) | |
Cre07g0431 | 1546 | SMART | WD40_4 | 388 | 428 | IPR001680 | GO:0005515(InterPro) | |
Cre07g0431 | 1546 | SMART | WD40_4 | 561 | 601 | IPR001680 | GO:0005515(InterPro) | |
Cre07g0431 | 1546 | SMART | WD40_4 | 520 | 558 | IPR001680 | GO:0005515(InterPro) | |
Cre07g0431 | 1546 | Gene3D | Magnesium transport protein CorA, transmembrane region | 822 | 1037 | - | - | |
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 1263 | 1317 | - | - | |
Cre07g0431 | 1546 | CDD | RING-HC_PCGF | 1133 | 1176 | - | - | |
Cre07g0431 | 1546 | ProSitePatterns | Zinc finger RING-type signature. | 1151 | 1160 | IPR017907 | - | |
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 1344 | 1411 | - | - | |
Cre07g0431 | 1546 | Gene3D | - | 1420 | 1524 | - | - | |
Cre07g0431 | 1546 | CDD | Mrs2_Mfm1p-like | 747 | 1104 | IPR039204 | - | |
Cre07g0431 | 1546 | SUPERFAMILY | RING/U-box | 1131 | 1200 | - | - | |
Cre07g0431 | 1546 | Gene3D | - | 378 | 692 | IPR015943 | GO:0005515(InterPro) | |
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 1265 | 1280 | - | - | |
Cre07g0431 | 1546 | SUPERFAMILY | WD40 repeat-like | 399 | 690 | IPR036322 | GO:0005515(InterPro) | |
Cre07g0431 | 1546 | FunFam | U3 small nucleolar RNA-associated protein 18 homolog | 379 | 693 | - | - | |
Cre07g0431 | 1546 | Pfam | WD domain, G-beta repeat | 523 | 558 | IPR001680 | GO:0005515(InterPro) | |
Cre07g0431 | 1546 | Coils | Coil | 181 | 201 | - | - | |
Cre07g0431 | 1546 | Gene3D | - | 730 | 818 | - | - | |
Cre07g0431 | 1546 | MobiDBLite | consensus disorder prediction | 1283 | 1315 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1987 | Cre-Chr2:33311962 | Cre07g0431 | Cre-Chr7:1999281 | 9.80E-114 | dispersed | |
Cre06g0944 | Cre-Chr6:2853748 | Cre07g0431 | Cre-Chr7:1999281 | 1.90E-08 | dispersed | |
Cre07g0431 | Cre-Chr7:1999281 | Cre10g1438 | Cre-Chr10:28110223 | 3.50E-86 | dispersed | |
Cre02g0369 | Cre-Chr2:810395 | Cre07g0431 | Cre-Chr7:1999281 | 9.60E-81 | transposed | |
Cre02g1542 | Cre-Chr2:27763806 | Cre07g0431 | Cre-Chr7:1999281 | 5.00E-268 | transposed | |
Cre08g0982 | Cre-Chr8:22943810 | Cre07g0431 | Cre-Chr7:1999281 | 1.60E-64 | transposed | |
Cre05g0571 | Cre-Chr5:5032320 | Cre07g0431 | Cre-Chr7:1999281 | 2.50E-60 | wgd | |
Cre06g1415 | Cre-Chr6:8444609 | Cre07g0431 | Cre-Chr7:1999281 | 9.30E-145 | wgd | |
Cre07g0431 | Cre-Chr7:1999281 | Cre09g0709 | Cre-Chr9:6850629 | 1.30E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53974 | PF02309 | AUX_IAA | 4.40E-07 | CL0072 | Cre | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g0431 | K14553 | - | csv:101208908 | 930.243 |