Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0436 ATGGAAGAGGTTGAAGAAGCTAACAAATCAGCCATAGAGAGCTGCCATGGAGTTTTGAATCTTTTAGTTCAACCTCCTCAAGACCAACTTCATTTCAGGAATCTAATGGTTGAAACTAAAGAAGCTGTTCTCAAGTTCAAGAAAGTTATTTCTCTCTTAAATTCTGGTTTTGGTCATGCCAGAGTTAGAAAATTCAACAAGATTCCTCTCCCTTTGCCTCAAAAATCCCTCTTAGATTCCCCAAATTACACTCCACATCCTCCAAACAAAAATCTTTACCCTTTTCACTCTGGTTTGAATGGTAAAGTTTCAATTTTTTTGGGAAACCCAGATTTAGAATTGAGTCCAAATGACAAGAATTCCCTCCAAATTCCCAAACAATCTCCATCTTTAAACTTCAGCTTCCCTCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGAGGATTTTGGCTCATCAGAAACAAATGAAACAGCAAGCAGAAATGATGTTTCTAAGGAATAACAGTGGGATGAACCTGAATTTTGACACATCTAATTGCACATTGACAATGTCATCAGCTAGATCTTTCATTTCTTCATTGAGTATGGATGGCAGCGTCGCCGACGGAAGCTCGTTCCATTTGATCGGACCGTCGTCAACGACAACGACGTCGGCCGATAACAAGAGGAAGTTTTCTGCAAGAGGAGATGAAGGAAGCTTGAAATGTGGAAGTACTGGCAAATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATCAAGGTACCTGCCATAAGTAACAAACTTGCAGATATCCCTTCTGATGATTATTCATGGAGAAAGTATGGGCAGAAGCCAATTAAGGGCTCTCCTCATCCCAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCGGCGAGAAAGCATGTCGAGCGGTGCTTAGAAGACCCGTCGATGCTTATTGTAACGTATGAAGGAGAGCATAATCACCCGAAAATGTCGACGCAATCTGCACACACTTAG 1017 41.89 MEEVEEANKSAIESCHGVLNLLVQPPQDQLHFRNLMVETKEAVLKFKKVISLLNSGFGHARVRKFNKIPLPLPQKSLLDSPNYTPHPPNKNLYPFHSGLNGKVSIFLGNPDLELSPNDKNSLQIPKQSPSLNFSFPQQQQQQQQQQQQRILAHQKQMKQQAEMMFLRNNSGMNLNFDTSNCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSSTTTTSADNKRKFSARGDEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHT 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2048638 2050341 + CrPI670011_07g004360.1 Cre07g0436 503017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0436 338 Pfam WRKY DNA -binding domain 272 329 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g0436 338 SUPERFAMILY WRKY DNA-binding domain 268 330 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g0436 338 SMART WRKY_cls 270 330 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g0436 338 FunFam WRKY transcription factor 65 254 331 - -
Cre07g0436 338 Pfam Plant zinc cluster domain 230 268 IPR018872 -
Cre07g0436 338 ProSiteProfiles WRKY domain profile. 265 331 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g0436 338 Gene3D WRKY domain 254 330 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g0436 338 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 334 IPR044810 GO:0003700(InterPro)
Cre07g0436 338 MobiDBLite consensus disorder prediction 116 150 - -
Cre07g0436 338 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2248 Cre-Chr6:30409200 Cre07g0436 Cre-Chr7:2048638 2.70E-39 dispersed
Cre07g0436 Cre-Chr7:2048638 Cre07g0618 Cre-Chr7:3968828 1.30E-22 dispersed
Cre07g0436 Cre-Chr7:2048638 Cre09g0718 Cre-Chr9:6971355 3.90E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53975 PF03106 WRKY 1.10E-26 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0436 - - - 0.0