Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0455 ATGGCTTCTTCTTCTTCCTCTTCCTCTGCAAATACTAGTGTGTCAGGCAGTGGTGGTGGTGGTGGCGGCGGCGGTGGCGGTGGCAGTGGCTCGCCTTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATTTTTGCTCCTTACTTTTGCTCAGAGCAAGGGGCTGCAAGATTTGCTGCCATTCATAAAGTGTTTGGTGCAAGTAATGTTTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCTTACGAAGCTCAAGCAAGGATTCATGATCCTGTTTATGGATGTGTTGCTCATATTTTTGCGCTCCAACAACAGGTGGCATATTTACAAACACAGCTAATGCAAGCCAAGGCTCAACTTGCACAAACCCTGATGGATTCAGGAGGTAATATGGAGATTCAATGGACAGGCAATTTCAATAACAATCTCTTCAATGGAATTCCAAATAATTATCAAACTCAGATTATGAACAACCCAGCAGTTTCCCCTCAGAGTTCTTTAGAATCAGCTGCCAACAATGATGAAGCTTTATTATTCATAAATAATCAAAATCACCTTCATGAAAGCCAAAGCAGATCACCAGAAGAATCTCAATTTCTTCAACCATTTCCTAGAAAAAAATTGCCTTCTTCTCATGCTGATCTTGGGGAACTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA 726 41.87 MASSSSSSSANTSVSGSGGGGGGGGGGGSGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGGNMEIQWTGNFNNNLFNGIPNNYQTQIMNNPAVSPQSSLESAANNDEALLFINNQNHLHESQSRSPEESQFLQPFPRKKLPSSHADLGELQALALRMMRN 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2314966 2316400 + CrPI670011_07g004550.1 Cre07g0455 503036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0455 241 MobiDBLite consensus disorder prediction 1 18 - -
Cre07g0455 241 MobiDBLite consensus disorder prediction 199 225 - -
Cre07g0455 241 PANTHER LOB DOMAIN CONTAINING PROTEIN 28 204 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cre07g0455 241 ProSiteProfiles LOB domain profile. 31 133 IPR004883 -
Cre07g0455 241 MobiDBLite consensus disorder prediction 1 25 - -
Cre07g0455 241 Pfam Lateral organ boundaries (LOB) domain 32 130 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0303 Cre-Chr5:2809150 Cre07g0455 Cre-Chr7:2314966 2.30E-39 dispersed
Cre06g0810 Cre-Chr6:1446945 Cre07g0455 Cre-Chr7:2314966 4.90E-43 dispersed
Cre07g0455 Cre-Chr7:2314966 Cre09g0763 Cre-Chr9:7479801 1.60E-38 dispersed
Cre07g0455 Cre-Chr7:2314966 Cre07g0456 Cre-Chr7:2324896 1.70E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53979 PF03195 LOB 2.90E-36 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0455 K13944 - csv:101214521 367.851