Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0456 ATGACGGGCTCAGGTTCTCCTTGTGGAGCTTGTAAATTCTTGAGAAGAAAATGTGTTAGAGGATGTGTTTTTGCACCATATTTTTGCCATGAACAAGGAGCTACTCATTTTGCTGCCATTCATAAAGTGTTTGGAGCTAGTAATGTTTCTAAGCTTCTTGCTCGTCTTCCTATTAGTGAAAGATGTGAGGCTGCTGTTACTATTTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAAGCACAACTTGCTTCTTTGAAGGAACAAGCAGCGGAAAGCATTATGAATGCGTCTGGTAACGGGGGCGGAGTGAATGAAAAGATTAATAATAGAAAGGTTCCTTCTCATCCCCAAGATCTCCATAGTTGGTTTCAATCGGAGCAACCAAACGTAACACTCGAGTTCAATCCGAATCCAACTCCGAATAATAATTCAGCATCAAACCCTTATTATGATGAGAATTATTGCATTATGGTTAATTCACAATCCAACGGGAACTATGAACATCACATGACTAAAATGGAGGAAAGTGGATCATATGGGAGCTATGAAGAAACCTCAGGCTATTCCATGTACACTCTTGATCAATTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCTGCTGATGATTTACAATCTGTTGCTTTTGGCAATAGACATTGGTGA 726 39.94 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPISERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESIMNASGNGGGVNEKINNRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNSASNPYYDENYCIMVNSQSNGNYEHHMTKMEESGSYGSYEETSGYSMYTLDQLHSNVQQWSFNESADDLQSVAFGNRHW 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2324896 2326122 - CrPI670011_07g004560.1 Cre07g0456 503037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0456 241 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Cre07g0456 241 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Cre07g0456 241 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 235 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cre07g0456 241 Coils Coil 87 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0811 Cre-Chr6:1464890 Cre07g0456 Cre-Chr7:2324896 1.10E-33 dispersed
Cre07g0456 Cre-Chr7:2324896 Cre09g0763 Cre-Chr9:7479801 5.80E-44 dispersed
Cre07g0455 Cre-Chr7:2314966 Cre07g0456 Cre-Chr7:2324896 1.70E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53980 PF03195 LOB 1.00E-35 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0456 K13945 - csv:101214764 423.32