Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0463 ATGGAATCCTCTTATTTTTCGTTTTCCGATTCGGATTTCTCGACGGAATCTTCATTCGGATCAGCGGAATCATCGTTCTCATGGAGTGAATTTTTCTCGATTCACAGTACCCTAGAAAACTCAATCTCACTAAACGAAGAATTTCTCGGGAATCAAACATCGGAATCGGAATCGAAAATTGTAGTGAAGGAAGAAACCGAAGTGAGTTCGATTGATTTCGAGGAGGAGAAAGAAAGGAAGACAACGGAGAAGAGTTACAGAGGAGTGAGACGGCGGCCGTGGGGGAAATACGCGGCGGAGATTAGGGATTCGACGAGACATGGAGTTAGGGTTTGGCTTGGAACTTTTGATAGCGCTGAAGCTGCGGCTTTAGCTTACGATCAAGCGGCATTTTCGATGAGAGGAGCAATGGCGGTGCTGAATTTTCCGGTGGAAATGGTGAGGGAATCACTGAAGGATATTAAGTATCAACTGGAAGAAGGATGTTCGCCGGTGGTGGCTTTGAAGAGGAAACACTCAATGAGAAGGAAATCGGCGGCGGCGGCGGTGAAAAGCCAAGGGGCGGCGGAGAAGAAGAAGATGAAGAAAAACAACAATGTGGTGATTTTGGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGCTAAGTTCATGA 660 45.91 MESSYFSFSDSDFSTESSFGSAESSFSWSEFFSIHSTLENSISLNEEFLGNQTSESESKIVVKEETEVSSIDFEEEKERKTTEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAMAVLNFPVEMVRESLKDIKYQLEEGCSPVVALKRKHSMRRKSAAAAVKSQGAAEKKKMKKNNNVVILEDLGTEYLEELLMLSS 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2396133 2396792 + CrPI670011_07g004630.1 Cre07g0463 503044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0463 219 MobiDBLite consensus disorder prediction 1 21 - -
Cre07g0463 219 Pfam AP2 domain 85 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g0463 219 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g0463 219 PANTHER DNA-BINDING DOMAIN 47 193 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cre07g0463 219 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g0463 219 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g0463 219 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g0463 219 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Cre07g0463 219 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677(InterPro)
Cre07g0463 219 CDD AP2 86 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g0463 219 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1450 Cre-Chr6:8907229 Cre07g0463 Cre-Chr7:2396133 1.40E-42 dispersed
Cre07g0463 Cre-Chr7:2396133 Cre09g0734 Cre-Chr9:7160025 1.30E-39 dispersed
Cre05g0527 Cre-Chr5:4680056 Cre07g0463 Cre-Chr7:2396133 1.30E-42 wgd
Cre06g1449 Cre-Chr6:8856471 Cre07g0463 Cre-Chr7:2396133 2.70E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53981 PF00847 AP2 1.20E-14 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0463 K14516 - csv:101220325 297.745