Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0485 ATGCATGCCACGTGGCAAAAGTTATGGGTATTGCTGTTTCTGGATTTTGCCTTCCCTCGCTCTTCTTTTACTTTTGGGAAATTAAAAGATTTTTGGCTGCAATCAAACAATATGAAGAGTGACGTTAAGATTAAAAGGGGGAGGAGCGCTGGAAAAAGGGAGAATATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAAAACAGCTGGGGATGATATGATTCCTGCAGCGGAATCGCCTTCTGCTTTCGAGAATTCAGGAAGTGGACGCTCTTCACGGACTGGGGAGATCGCCAAGAAGCCAGAAATTGGCAATATAGAAGAAGCTGAGTCTTCGCTTCGTGAGAGTGGTTGCTTAAATTATGAGGAAGCAAGAGCATTGCTAGGAAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATCACTGCTATAACTAGTAAGATAATGATCTCCATAGCTAGAAGAGGAGACCGTCCACAGAGACGATCACAGAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCCTTCTGAAAGCAAAATCATTGCAAGGCCTTGGGAGGTTCGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTGGAGCTGCTACCAGAGTTATGGAAGCTAGCTGATGCTTCTCAAGAAGCGATCCTTTCATACCGGCGAGCACTTCTTCATCAGTGGAACCTTGATGCAGGAACCACTGCTCGAATCCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGATGTGAAGCTTGCCCTCCGAATCTCCGGTCCCAAATGGACAGCTCATTTGTACCAAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAGAGGATTGATTGGGATCCATCAATCTTGGATCATCTCTCCTTTGCTCTAACAATATCAGGGGATACAAGGGCTTTAGCAGGTCAAATAGAAGAATTGCCTCCTGGGATTCTACATCGACAAGAAAGGTATCATGCTCTAGCTCTGTGTTACTATGGAGCGGGTGAAAACTTGACTGCTTTGAATCTGTTGAGGAAATTGTTGGGTAATCATGAGGATCCTAAATCGCTTCCCGCTTTATTGATGGCGTCGAAGATTTGTGGAGAGAACTGCGACCTTGCTGAAGAGGGAACGAGTTTTGCTCATAGAGCTCTTCAAAACTTGGATCATGGATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCACTGTCTGTATATTCTAAATCTGCCACTGCAGATTCCGAGAAGTCCACCAGACAATCTGAGGCAATTGAGGCCTTGGAAGCTGCACGGAAGACGACTAGAACAGCTGACCCTAATGTCCTCTATCATTTGAGTCTTGAATATGCTGACGAGAGGAAGTTAGATTCAGCACTTTATTATGCAAAGAAGTGTCTCAAGCTGGAAGGTGGATCTAATGTTAAAACTTGGTTACTACTGGCTAGAATTCTCTCTGCCCAAAAACGATTTACAGATAGCGAAAGTATTATAAATGCAGCTCTGGATCAGACAGGGAAATGGGAGCAAGCCGAGTTGCTTCAAACGAAAGCAAAGCTTCTAATTGCACAGGATGAGTTTAAAGGTGCTATTGAGACTTATAGTCAATTACTCGCTGTTTTTCAAGTTCAGAGTAAAAATTTCAGTTTGGGAGATAAGAAGCTACATAAGAGCAGCAGAAATCATGCTAGAAGATTGCAATTGGAAGTGTGGCATGATCTAGCTGTAGTCTACATAAGGCTCTCACAATGGCACGACGCCGAGGCCTGCCTTTCAAAGTCGAAGGCCATCTCTTCTCATTCGGCACCCAGATGCCACATTACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGGCTGCTCTGGACATTGATCCCGTTCATGTCCCGAGCTTGGTCTCATCTGCGGTGGTTATCAGACATCTTGGCCACCAATCGCATCCCGTCATTCGCAGCTTTTTGATGGATGCTCTACGGCTCGATCAAACGAACCATGCTGCGTGGTACAATCTTGGGCTATTCTACAAGTCTGAAGGAACCAAGTCTTCATTAGCAGAAGCTGTTGAATGTTTTGAGGCTGCAACTTTTCTTGAAGAGTCTGCTCCTGTTGAACCCTTTAGATAA 2316 43.22 MHATWQKLWVLLFLDFAFPRSSFTFGKLKDFWLQSNNMKSDVKIKRGRSAGKRENIRKIMKCLCSGEKTAGDDMIPAAESPSAFENSGSGRSSRTGEIAKKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAITSKIMISIARRGDRPQRRSQNFTAPPMSMHAVSLLLEAILLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLADASQEAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGCEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALTISGDTRALAGQIEELPPGILHRQERYHALALCYYGAGENLTALNLLRKLLGNHEDPKSLPALLMASKICGENCDLAEEGTSFAHRALQNLDHGCDQLEGVANCLLGVSLSVYSKSATADSEKSTRQSEAIEALEAARKTTRTADPNVLYHLSLEYADERKLDSALYYAKKCLKLEGGSNVKTWLLLARILSAQKRFTDSESIINAALDQTGKWEQAELLQTKAKLLIAQDEFKGAIETYSQLLAVFQVQSKNFSLGDKKLHKSSRNHARRLQLEVWHDLAVVYIRLSQWHDAEACLSKSKAISSHSAPRCHITGMLYEAKGLYKEALKAFMAALDIDPVHVPSLVSSAVVIRHLGHQSHPVIRSFLMDALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEESAPVEPFR 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2672830 2677512 + CrPI670011_07g004850.1 Cre07g0485 503066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0485 771 Pfam Tetratricopeptide repeat 666 691 IPR019734 GO:0005515(InterPro)
Cre07g0485 771 SUPERFAMILY TPR-like 479 698 IPR011990 GO:0005515(InterPro)
Cre07g0485 771 Gene3D Tetratricopeptide repeat domain 94 602 IPR011990 GO:0005515(InterPro)
Cre07g0485 771 PANTHER PROTEIN NPG1 51 771 IPR043376 -
Cre07g0485 771 SMART tpr_5 568 601 IPR019734 GO:0005515(InterPro)
Cre07g0485 771 SMART tpr_5 532 565 IPR019734 GO:0005515(InterPro)
Cre07g0485 771 SMART tpr_5 190 223 IPR019734 GO:0005515(InterPro)
Cre07g0485 771 SMART tpr_5 659 692 IPR019734 GO:0005515(InterPro)
Cre07g0485 771 SMART tpr_5 497 530 IPR019734 GO:0005515(InterPro)
Cre07g0485 771 SMART tpr_5 729 765 IPR019734 GO:0005515(InterPro)
Cre07g0485 771 SMART tpr_5 625 658 IPR019734 GO:0005515(InterPro)
Cre07g0485 771 MobiDBLite consensus disorder prediction 79 104 - -
Cre07g0485 771 ProSiteProfiles TPR repeat profile. 659 692 IPR019734 GO:0005515(InterPro)
Cre07g0485 771 Pfam Tetratricopeptide repeat 509 574 - -
Cre07g0485 771 Gene3D Tetratricopeptide repeat domain 603 765 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1597 Cre-Chr8:28469092 Cre07g0485 Cre-Chr7:2672830 5.00E-160 transposed
Cre11g2073 Cre-Chr11:32514084 Cre07g0485 Cre-Chr7:2672830 2.10E-171 transposed
Cre05g0501 Cre-Chr5:4473052 Cre07g0485 Cre-Chr7:2672830 8.50E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0485 K21843 - csv:101223229 1335.86