Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0529 ATGGCGGTCTCTCTTACACTACAGTTTTCCACCGCTTCTTCAATCCTTTTCCTTCTTCTTCTCATCATCTTCTTCGTTCAATCCAGTTTTGCTCGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCAATGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATTGATGATTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAGCATCTGGCCAACTGTGGCATTGGGTTCGGACGTAATGCGGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCCAATCCTGGTGACGACGATCCTGTCAATCCCCGACCAGGGACCCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTATTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGTGCTAATGTCCATATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTCATTATTCATGGTTTGCATATTCACGACTGCAAGCGGACAGGGAACGCCATGGTTCGAAGCTCGCCGAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGTATTTCTATCTTTGGGTCAAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTTCTGATGGACTCATTGATGCTATCATGGGATCAACTGCCATCACTATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGAAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGCCAATCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGAAACAAATAACGGTGTATGGAGGCACTGGAATTGGAGATCAGAAGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCATCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCACCATTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA 1308 44.88 MAVSLTLQFSTASSILFLLLLIIFFVQSSFARDERLQSFNSSSMADRYIKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSNPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKRTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAASSYARASSLGAKSSSLVGTITSNAGALSCRRGFRC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3139449 3145123 - CrPI670011_07g005290.1 Cre07g0529 503110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0529 435 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cre07g0529 435 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cre07g0529 435 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cre07g0529 435 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cre07g0529 435 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cre07g0529 435 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cre07g0529 435 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cre07g0529 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cre07g0529 435 PANTHER PECTATE LYASE 18-RELATED 23 432 IPR045032 GO:0030570(InterPro)
Cre07g0529 435 Gene3D - 86 428 IPR012334 -
Cre07g0529 435 Pfam Pectate lyase 169 350 IPR002022 -
Cre07g0529 435 FunFam Pectate lyase 86 428 - -
Cre07g0529 435 SUPERFAMILY Pectin lyase-like 64 430 IPR011050 -
Cre07g0529 435 SMART amb_all 161 358 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0529 Cre-Chr7:3139449 Cre08g1690 Cre-Chr8:29305832 6.50E-171 dispersed
Cre05g0447 Cre-Chr5:4069326 Cre07g0529 Cre-Chr7:3139449 2.10E-204 wgd
Cre06g1543 Cre-Chr6:10356445 Cre07g0529 Cre-Chr7:3139449 2.70E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0529 K01728 - csv:101207204 828.935