Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g0529 | ATGGCGGTCTCTCTTACACTACAGTTTTCCACCGCTTCTTCAATCCTTTTCCTTCTTCTTCTCATCATCTTCTTCGTTCAATCCAGTTTTGCTCGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCAATGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATTGATGATTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAGCATCTGGCCAACTGTGGCATTGGGTTCGGACGTAATGCGGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCCAATCCTGGTGACGACGATCCTGTCAATCCCCGACCAGGGACCCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTATTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGTGCTAATGTCCATATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTCATTATTCATGGTTTGCATATTCACGACTGCAAGCGGACAGGGAACGCCATGGTTCGAAGCTCGCCGAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGTATTTCTATCTTTGGGTCAAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTTCTGATGGACTCATTGATGCTATCATGGGATCAACTGCCATCACTATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGAAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGCCAATCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGAAACAAATAACGGTGTATGGAGGCACTGGAATTGGAGATCAGAAGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCATCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCACCATTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA | 1308 | 44.88 | MAVSLTLQFSTASSILFLLLLIIFFVQSSFARDERLQSFNSSSMADRYIKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSNPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKRTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAASSYARASSLGAKSSSLVGTITSNAGALSCRRGFRC | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3139449 | 3145123 | - | CrPI670011_07g005290.1 | Cre07g0529 | 503110 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g0529 | 435 | PRINTS | Pollen allergen Amb family signature | 109 | 126 | IPR018082 | - | |
Cre07g0529 | 435 | PRINTS | Pollen allergen Amb family signature | 169 | 185 | IPR018082 | - | |
Cre07g0529 | 435 | PRINTS | Pollen allergen Amb family signature | 233 | 254 | IPR018082 | - | |
Cre07g0529 | 435 | PRINTS | Pollen allergen Amb family signature | 313 | 332 | IPR018082 | - | |
Cre07g0529 | 435 | PRINTS | Pollen allergen Amb family signature | 377 | 401 | IPR018082 | - | |
Cre07g0529 | 435 | PRINTS | Pollen allergen Amb family signature | 335 | 354 | IPR018082 | - | |
Cre07g0529 | 435 | PRINTS | Pollen allergen Amb family signature | 133 | 158 | IPR018082 | - | |
Cre07g0529 | 435 | PRINTS | Pollen allergen Amb family signature | 406 | 429 | IPR018082 | - | |
Cre07g0529 | 435 | PANTHER | PECTATE LYASE 18-RELATED | 23 | 432 | IPR045032 | GO:0030570(InterPro) | |
Cre07g0529 | 435 | Gene3D | - | 86 | 428 | IPR012334 | - | |
Cre07g0529 | 435 | Pfam | Pectate lyase | 169 | 350 | IPR002022 | - | |
Cre07g0529 | 435 | FunFam | Pectate lyase | 86 | 428 | - | - | |
Cre07g0529 | 435 | SUPERFAMILY | Pectin lyase-like | 64 | 430 | IPR011050 | - | |
Cre07g0529 | 435 | SMART | amb_all | 161 | 358 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g0529 | Cre-Chr7:3139449 | Cre08g1690 | Cre-Chr8:29305832 | 6.50E-171 | dispersed | |
Cre05g0447 | Cre-Chr5:4069326 | Cre07g0529 | Cre-Chr7:3139449 | 2.10E-204 | wgd | |
Cre06g1543 | Cre-Chr6:10356445 | Cre07g0529 | Cre-Chr7:3139449 | 2.70E-196 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g0529 | K01728 | - | csv:101207204 | 828.935 |