Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0553 ATGGGTGGCCGCACGTTGTTCACTTTGGCTGAGGTTGCCTCCCATGACAATCGCAACGACTGCTGGTTGATCATCGAAGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGGCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGACGTCGGGCACAGTAGTGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATTGATAGCTCGACTATTCCTGTGAAAAGGAAGTACAGTCCTCCAAAGCAGCCACTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTTGCTCCCCTGGTAATTTTGGGCTTGGCTTTTGGCATCCACCTCTATACCAAAACAACTTAA 402 45.77 MGGRTLFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLAGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPVKRKYSPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYTKTT 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3362635 3364668 - CrPI670011_07g005530.1 Cre07g0553 503134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0553 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Cre07g0553 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Cre07g0553 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Cre07g0553 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Cre07g0553 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Cre07g0553 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037(InterPro)
Cre07g0553 133 FunFam Cytochrome b5 type B 2 84 - -
Cre07g0553 133 SMART Cyt_b5_2 7 80 IPR001199 -
Cre07g0553 133 Gene3D - 3 85 IPR036400 -
Cre07g0553 133 PANTHER CYTOCHROME B5 6 126 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cre07g0553 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 91 IPR036400 -
Cre07g0553 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0553 K23490 - - csv:101212882 259.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0553 Cre-Chr7:3362635 Cre09g2485 Cre-Chr9:44142096 1.70E-42 dispersed
Cre11g0703 Cre-Chr11:4117536 Cre07g0553 Cre-Chr7:3362635 1.40E-15 transposed
Cre05g0427 Cre-Chr5:3865275 Cre07g0553 Cre-Chr7:3362635 1.50E-49 wgd
Cre06g1552 Cre-Chr6:10651270 Cre07g0553 Cre-Chr7:3362635 1.30E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0427 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cre09g2485 . 23 138 NADPH P450 reductases AT5G53560 78.4 6.1e-51 197.2
Cre06g1552 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.4e-47 186.0
Cre07g0553 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.9e-44 175.6
Cre05g0427 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.6e-48 186.8
Cre06g1552 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.8e-46 181.8
Cre07g0553 . 2 132 NADPH P450 reductases AT5G48810 62.4 4.0e-45 177.9
Cre09g2485 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.3e-40 162.2
Cre05g0427 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.9e-51 196.8
Cre06g1552 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.9e-47 183.7
Cre07g0553 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.6e-41 165.2
Cre09g2485 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.7e-41 163.3
Cre08g0985 . 1 130 NADPH P450 reductases AT1G26340 54.8 2.9e-37 151.8
Cre04g0607 . 2 281 NADPH P450 reductases AT5G17770 82.1 1.1e-131 466.5
Cre10g1789 . 2 280 NADPH P450 reductases AT5G17770 78.1 8.3e-127 450.3
Cre02g2727 . 526 798 NADPH P450 reductases AT5G17770 73.3 1.0e-116 416.8
Cre05g0427 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cre09g2485 . 23 138 NADPH P450 reductases AT5G53560 78.4 6.1e-51 197.2
Cre06g1552 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.4e-47 186.0
Cre07g0553 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.9e-44 175.6
Cre05g0427 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.6e-48 186.8
Cre06g1552 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.8e-46 181.8
Cre07g0553 . 2 132 NADPH P450 reductases AT5G48810 62.4 4.0e-45 177.9
Cre09g2485 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.3e-40 162.2
Cre05g0427 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.9e-51 196.8
Cre06g1552 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.9e-47 183.7
Cre07g0553 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.6e-41 165.2
Cre09g2485 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.7e-41 163.3
Cre08g0985 . 1 130 NADPH P450 reductases AT1G26340 54.8 2.9e-37 151.8
Cre04g0607 . 2 281 NADPH P450 reductases AT5G17770 82.1 1.1e-131 466.5
Cre10g1789 . 2 280 NADPH P450 reductases AT5G17770 78.1 8.3e-127 450.3
Cre02g2727 . 526 798 NADPH P450 reductases AT5G17770 73.3 1.0e-116 416.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156