Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0572 ATGGGGCCGGGAGTGCCCTTATCTGGTGCTGCAAAACAGGCCGAGCTTCTCAGAAAAGATGGCAACCACTATTTTCAAAAGGGTCGAATTGGAGCTGCCATTGAAGCTTATACCGAGGCGATTACACTATGCCCGAATGTTCCTGTTTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATAGCAGTTCTGTCAAGGCACATTACATGTTAGGATTAGCATTAATACAAAATAAAGAATATCCGGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAACCCAAAGAGTTATATAGTAGAGGAGATATGGCAGGAACTTTCTAGAGCGAAATACAGGGAGTGGGAACAAGCCTCCACCGAACGTTCATGGGAATTACAGACATTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAATCTGAACTTGAAGGGTTCGTAGATGAAGCCGAAATTGCTCATCGGAAACAATTAAAATCACTAAGAACTGTGTTCGAAAAAGTTGCCGAGGCAGATGCGCCGTCTGAGGTGCCTGACTATCTCTGTTGTAAAATCACGCTCGATATTCTCCGCGATCCTGTTATTACTCCGAGTGGGGTTACTTATGAGAGAGCAGTGATTCTCGACCATTTTCGAAAGGTTGGTAACTTCGATCCCATAACACGGGAGCTGCTTCACGAGTCCCAGCTAGTACCAAACTTAGCCATCAAGGAAGCAGTACAATCATTTCTAGATAAGCATGGATGGGCTTATAATACAAATTAA 846 44.56 MGPGVPLSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDSSSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYIVEEIWQELSRAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVDEAEIAHRKQLKSLRTVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLHESQLVPNLAIKEAVQSFLDKHGWAYNTN 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3489766 3496776 + CrPI670011_07g005720.1 Cre07g0572 503153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0572 281 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Cre07g0572 281 Pfam U-box domain 204 276 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre07g0572 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Cre07g0572 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515(InterPro)
Cre07g0572 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515(InterPro)
Cre07g0572 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515(InterPro)
Cre07g0572 281 Pfam Tetratricopeptide repeat 24 46 IPR019734 GO:0005515(InterPro)
Cre07g0572 281 SMART Ubox_2 207 270 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre07g0572 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre07g0572 281 SUPERFAMILY RING/U-box 199 278 - -
Cre07g0572 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 279 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
Cre07g0572 281 SMART tpr_5 82 115 IPR019734 GO:0005515(InterPro)
Cre07g0572 281 SMART tpr_5 48 81 IPR019734 GO:0005515(InterPro)
Cre07g0572 281 SMART tpr_5 14 47 IPR019734 GO:0005515(InterPro)
Cre07g0572 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 108 - -
Cre07g0572 281 SUPERFAMILY TPR-like 12 133 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0572 K09561 - - csv:101215457 547.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0572 Cre-Chr7:3489766 Cre05g0232 Cre-Chr5:2214244 5.60E-06 dispersed
Cre07g0572 Cre-Chr7:3489766 Cre10g1945 Cre-Chr10:34150534 4.30E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1678 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.7
Cre02g1560 . 279 923 U-box Gene Family AT2G23140 66.6 2.1e-125 446.8
Cre08g1657 . 1 777 U-box Gene Family AT1G24330 59.9 1.4e-245 846.3
Cre11g1810 . 1 755 U-box Gene Family AT1G24330 58.3 3.8e-230 795.0
Cre08g1657 . 1 776 U-box Gene Family AT1G67530 59.6 3.3e-242 835.1
Cre11g1810 . 1 756 U-box Gene Family AT1G67530 57.3 2.6e-226 782.3
Cre04g1857 . 1 362 U-box Gene Family AT4G21350 62.3 1.2e-120 430.3
Cre07g0573 . 135 460 U-box Gene Family AT3G07360 55.3 4.2e-82 302.0
Cre07g1008 . 265 452 U-box Gene Family AT1G71020 70.9 9.0e-73 271.6
Cre09g1916 . 1078 1282 U-box Gene Family AT1G71020 55.6 1.9e-54 210.7
Cre05g2297 . 249 416 U-box Gene Family AT1G71020 57.9 7.7e-48 188.7
Cre03g0473 . 281 450 U-box Gene Family AT1G71020 57.8 1.0e-47 188.3
Cre02g2329 . 255 425 U-box Gene Family AT1G71020 57.6 1.5e-46 184.5
Cre07g1008 . 16 656 U-box Gene Family AT1G23030 56.8 6.9e-110 395.2
Cre03g0473 . 116 655 U-box Gene Family AT2G28830 60.1 5.9e-103 372.1
Cre02g2329 . 93 635 U-box Gene Family AT2G28830 50.5 3.4e-98 356.3
Cre03g0473 . 24 689 U-box Gene Family AT3G46510 68.4 3.2e-169 592.4
Cre02g2329 . 3 638 U-box Gene Family AT3G46510 66.1 1.4e-156 550.4
Cre05g2297 . 16 623 U-box Gene Family AT3G46510 59.0 3.8e-122 436.0
Cre02g1342 . 36 640 U-box Gene Family AT3G46510 50.2 6.8e-87 318.9
Cre05g2297 . 12 625 U-box Gene Family AT3G54850 68.6 5.0e-164 575.1
Cre02g2329 . 13 628 U-box Gene Family AT3G54850 57.3 5.6e-115 412.1
Cre03g0473 . 31 650 U-box Gene Family AT3G54850 55.4 2.9e-103 373.2
Cre02g1342 . 92 644 U-box Gene Family AT5G42340 64.2 7.9e-128 454.9
Cre04g0745 . 9 669 U-box Gene Family AT5G01830 57.8 7.9e-200 694.1
Cre03g0979 . 1 714 U-box Gene Family AT1G29340 68.0 1.9e-247 852.4
Cre05g1302 . 27 442 U-box Gene Family AT5G37490 51.7 1.3e-110 397.1
Cre04g0706 . 4 422 U-box Gene Family AT3G52450 52.4 4.4e-119 425.2
Cre10g1945 . 1 403 U-box Gene Family AT3G52450 50.9 3.9e-115 412.1
Cre10g1945 . 1 403 U-box Gene Family AT2G35930 55.8 1.7e-120 429.9
Cre04g0706 . 7 422 U-box Gene Family AT2G35930 51.4 5.1e-117 418.3
Cre05g1190 . 9 424 U-box Gene Family AT3G19380 64.4 2.2e-147 519.2
Cre05g1190 . 1 424 U-box Gene Family AT1G49780 64.6 6.6e-152 534.3
Cre04g1187 . 1 407 U-box Gene Family AT5G64660 53.9 4.6e-121 431.8
Cre04g1187 . 1 407 U-box Gene Family AT5G09800 50.8 1.2e-105 380.6
Cre05g2828 . 1 454 U-box Gene Family AT3G49810 63.0 1.5e-154 543.1
Cre08g1608 . 1 456 U-box Gene Family AT3G49810 62.3 8.2e-153 537.3
Cre08g1608 . 1 456 U-box Gene Family AT5G65920 63.4 1.4e-152 536.6
Cre05g2828 . 1 454 U-box Gene Family AT5G65920 61.8 2.1e-148 522.7
Cre05g0232 . 72 943 U-box Gene Family AT2G45910 52.6 5.5e-235 811.2
Cre09g2062 . 65 841 U-box Gene Family AT4G25160 51.1 1.8e-217 753.1
Cre01g0585 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cre01g1292 . 29 498 U-box Gene Family AT5G40140 51.9 5.2e-56 216.1
Cre08g0873 . 26 834 U-box Gene Family AT1G76390 61.5 3.0e-270 928.3
Cre08g0873 . 35 834 U-box Gene Family AT1G20780 62.0 3.5e-279 958.0
Cre08g1657 . 1 779 U-box Gene Family AT1G27910 62.8 1.6e-268 922.5
Cre11g1810 . 1 767 U-box Gene Family AT1G27910 62.4 5.7e-263 904.0
Cre04g1378 . 443 1034 U-box Gene Family AT5G67530 74.2 3.2e-261 897.9
Cre10g1992 . 12 162 U-box Gene Family AT5G67530 50.3 1.0e-41 168.7
Cre05g0294 . 656 788 U-box Gene Family AT5G67530 56.4 2.5e-40 164.1
Cre05g0488 . 1 517 U-box Gene Family AT1G04510 74.4 5.7e-222 767.3
Cre05g0488 . 1 486 U-box Gene Family AT2G33340 73.6 5.1e-209 724.2
Cre07g0572 . 10 278 U-box Gene Family AT3G07370 66.5 2.0e-101 365.9
Cre10g1678 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.7
Cre02g1560 . 279 923 U-box Gene Family AT2G23140 66.6 2.1e-125 446.8
Cre08g1657 . 1 777 U-box Gene Family AT1G24330 59.9 1.4e-245 846.3
Cre11g1810 . 1 755 U-box Gene Family AT1G24330 58.3 3.8e-230 795.0
Cre08g1657 . 1 776 U-box Gene Family AT1G67530 59.6 3.3e-242 835.1
Cre11g1810 . 1 756 U-box Gene Family AT1G67530 57.3 2.6e-226 782.3
Cre04g1857 . 1 362 U-box Gene Family AT4G21350 62.3 1.2e-120 430.3
Cre07g0573 . 135 460 U-box Gene Family AT3G07360 55.3 4.2e-82 302.0
Cre07g1008 . 265 452 U-box Gene Family AT1G71020 70.9 9.0e-73 271.6
Cre09g1916 . 1078 1282 U-box Gene Family AT1G71020 55.6 1.9e-54 210.7
Cre05g2297 . 249 416 U-box Gene Family AT1G71020 57.9 7.7e-48 188.7
Cre03g0473 . 281 450 U-box Gene Family AT1G71020 57.8 1.0e-47 188.3
Cre02g2329 . 255 425 U-box Gene Family AT1G71020 57.6 1.5e-46 184.5
Cre07g1008 . 16 656 U-box Gene Family AT1G23030 56.8 6.9e-110 395.2
Cre03g0473 . 116 655 U-box Gene Family AT2G28830 60.1 5.9e-103 372.1
Cre02g2329 . 93 635 U-box Gene Family AT2G28830 50.5 3.4e-98 356.3
Cre03g0473 . 24 689 U-box Gene Family AT3G46510 68.4 3.2e-169 592.4
Cre02g2329 . 3 638 U-box Gene Family AT3G46510 66.1 1.4e-156 550.4
Cre05g2297 . 16 623 U-box Gene Family AT3G46510 59.0 3.8e-122 436.0
Cre02g1342 . 36 640 U-box Gene Family AT3G46510 50.2 6.8e-87 318.9
Cre05g2297 . 12 625 U-box Gene Family AT3G54850 68.6 5.0e-164 575.1
Cre02g2329 . 13 628 U-box Gene Family AT3G54850 57.3 5.6e-115 412.1
Cre03g0473 . 31 650 U-box Gene Family AT3G54850 55.4 2.9e-103 373.2
Cre02g1342 . 92 644 U-box Gene Family AT5G42340 64.2 7.9e-128 454.9
Cre04g0745 . 9 669 U-box Gene Family AT5G01830 57.8 7.9e-200 694.1
Cre03g0979 . 1 714 U-box Gene Family AT1G29340 68.0 1.9e-247 852.4
Cre05g1302 . 27 442 U-box Gene Family AT5G37490 51.7 1.3e-110 397.1
Cre04g0706 . 4 422 U-box Gene Family AT3G52450 52.4 4.4e-119 425.2
Cre10g1945 . 1 403 U-box Gene Family AT3G52450 50.9 3.9e-115 412.1
Cre10g1945 . 1 403 U-box Gene Family AT2G35930 55.8 1.7e-120 429.9
Cre04g0706 . 7 422 U-box Gene Family AT2G35930 51.4 5.1e-117 418.3
Cre05g1190 . 9 424 U-box Gene Family AT3G19380 64.4 2.2e-147 519.2
Cre05g1190 . 1 424 U-box Gene Family AT1G49780 64.6 6.6e-152 534.3
Cre04g1187 . 1 407 U-box Gene Family AT5G64660 53.9 4.6e-121 431.8
Cre04g1187 . 1 407 U-box Gene Family AT5G09800 50.8 1.2e-105 380.6
Cre05g2828 . 1 454 U-box Gene Family AT3G49810 63.0 1.5e-154 543.1
Cre08g1608 . 1 456 U-box Gene Family AT3G49810 62.3 8.2e-153 537.3
Cre08g1608 . 1 456 U-box Gene Family AT5G65920 63.4 1.4e-152 536.6
Cre05g2828 . 1 454 U-box Gene Family AT5G65920 61.8 2.1e-148 522.7
Cre05g0232 . 72 943 U-box Gene Family AT2G45910 52.6 5.5e-235 811.2
Cre09g2062 . 65 841 U-box Gene Family AT4G25160 51.1 1.8e-217 753.1
Cre01g0585 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cre01g1292 . 29 498 U-box Gene Family AT5G40140 51.9 5.2e-56 216.1
Cre08g0873 . 26 834 U-box Gene Family AT1G76390 61.5 3.0e-270 928.3
Cre08g0873 . 35 834 U-box Gene Family AT1G20780 62.0 3.5e-279 958.0
Cre08g1657 . 1 779 U-box Gene Family AT1G27910 62.8 1.6e-268 922.5
Cre11g1810 . 1 767 U-box Gene Family AT1G27910 62.4 5.7e-263 904.0
Cre04g1378 . 443 1034 U-box Gene Family AT5G67530 74.2 3.2e-261 897.9
Cre10g1992 . 12 162 U-box Gene Family AT5G67530 50.3 1.0e-41 168.7
Cre05g0294 . 656 788 U-box Gene Family AT5G67530 56.4 2.5e-40 164.1
Cre05g0488 . 1 517 U-box Gene Family AT1G04510 74.4 5.7e-222 767.3
Cre05g0488 . 1 486 U-box Gene Family AT2G33340 73.6 5.1e-209 724.2
Cre07g0572 . 10 278 U-box Gene Family AT3G07370 66.5 2.0e-101 365.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003324 3 4 1 6 2 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 45