Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0573 ATGGCCAAAACAGGCGTCTTTGATTCTGATCCTGCAGTTATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACACAGACTTATCGTTGCTATAATTGATGACGATAATTACTCCACCGACACCATTGATAACGCTAAAGAAATTCTTTCTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCGCGTTCTTCTTCTAATCTTTTCGAGAATCTCATTTGTCCTGAGGAATTTCGTTGTCCGCTCTCTAGAGAACTCATGAGAGATCCTGTCATTGTGTCTACTGGCGAGACATATGACAGACCCTTCATTCAGAAATGGTTAAAATCAGGGAACAGGACTTGCCCCAGAACTCAGCAAGTTCTTTCACACACCAACCTCACTCCCAATCACTTGATTCGTCAAATGATAGCTCAATGGTGTGCAACTCGGGGAATTGAGTTGCAAGATCGCGTCCGTGTTCATTATCTTGATGACGATGTCATAACAGAGGCTGATCGAGACCGTTTTCTCACGTTAATAGAGAAAATGTCTATGACAATATCTGAACAGAAAGCAGCTGCAAAGGAGCTTCGAATGTTGACGAAGCGAATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCTTGATGCCATATCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTATTAGTGTTCACACGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATTTGTCGATCCATGACAACAACAAGAAGCTTGTTGCCGAAACACCCAAGGTAATACCTCTTCTAATGGAAGCGTTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTGTTTACTCTGTCAGCTCTCGACTCAAACAAAGCAATCATTGGGAAAGCTGGTGCCTTGCAACCCCTTATCAACCTATTAGATGAGGGGCATCCTTTATCAATCAAAGATGCTGCTTCAGCAATATTCAATCTTTGTATAATTCATGAAAACAAAGCAAGAGCCGTGCGAGATGGTGCAGTCCGAGTGCTTTTGAAAAAGATCATGAACCAGATGCATGTTGATGAGTTGTTGGCTATTCTGGCAATGCTATCATGCCATCAAAAAGCTATCGAAGAAATTGGAGAACTTGGAGCTGTCCCTTACTTACTCAGAATTATCAGGGAAAGTTCTTGTTCGCGTAACAAGGAAAATTGCATCGTGATCATCCATGCTATCTGCTTATACGATCGAACCAAGTGGAAGGATATGAGGGAGGAAGAGAAATGCTATCGAACTATATCTGAACTTGCTCAGAATGGAACTTCAAGGGCTAAGAGAAAGGCCAGTGGCATACTCGAAAGATTAAACAGGGTAGTTAATATGACCCATACCGCCTAA 1383 43.09 MAKTGVFDSDPAVMGKATELKRELHRLIVAIIDDDNYSTDTIDNAKEILSALKELKLRKRSRSSSNLFENLICPEEFRCPLSRELMRDPVIVSTGETYDRPFIQKWLKSGNRTCPRTQQVLSHTNLTPNHLIRQMIAQWCATRGIELQDRVRVHYLDDDVITEADRDRFLTLIEKMSMTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSISVHTDLQEDVITTLLNLSIHDNNKKLVAETPKVIPLLMEALRSGTMETRSNAAAALFTLSALDSNKAIIGKAGALQPLINLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSCHQKAIEEIGELGAVPYLLRIIRESSCSRNKENCIVIIHAICLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRVVNMTHTA 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3503448 3505335 - CrPI670011_07g005730.1 Cre07g0573 503154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0573 460 SMART Ubox_2 76 139 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre07g0573 460 Gene3D - 209 355 IPR011989 -
Cre07g0573 460 CDD RING-Ubox_PUB 74 126 IPR045210 -
Cre07g0573 460 Pfam Armadillo/beta-catenin-like repeat 291 327 IPR000225 GO:0005515(InterPro)
Cre07g0573 460 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre07g0573 460 Pfam U-box domain 74 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre07g0573 460 SUPERFAMILY ARM repeat 182 450 IPR016024 -
Cre07g0573 460 SMART arm_5 246 287 IPR000225 GO:0005515(InterPro)
Cre07g0573 460 SMART arm_5 368 409 IPR000225 GO:0005515(InterPro)
Cre07g0573 460 SMART arm_5 288 328 IPR000225 GO:0005515(InterPro)
Cre07g0573 460 FunFam RING-type E3 ubiquitin transferase 72 146 - -
Cre07g0573 460 FunFam RING-type E3 ubiquitin transferase 159 456 - -
Cre07g0573 460 Gene3D - 356 456 IPR011989 -
Cre07g0573 460 PANTHER U BOX DOMAIN-CONTAINING 40 452 - -
Cre07g0573 460 SUPERFAMILY RING/U-box 73 149 - -
Cre07g0573 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0573 Cre-Chr7:3503448 Cre11g1087 Cre-Chr11:8331211 4.50E-37 dispersed
Cre07g0573 Cre-Chr7:3503448 Cre02g2329 Cre-Chr2:36774721 1.30E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0573 K27971 - csv:101215688 812.757