Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0581 ATGGCACCGCTCTTAAACGATCACTTCAGTTTTCAAACGCCAGAAAATGAGGCTGTTATTACTAAAAATATTCCTCGCTCTGAACACACCAACAAGTATCCTACTTGGTATTCACCAGATACAGGAATTTGTCGTAGTGTTCATGCCCCCAGAGAAGTTCCCTCTGACCCATTTCTTGATGTTGTCTCCTTCATCTTCTCCTTCCAACACAATGGACATTCAGCTCTCATTGATTCCTCAACTGGAAATTCAATATCTTACAGAGAAATGTTTCGTATGGTCAAGTCTGTGGCTTCTGGCCTCCACAAGTTGGGTATATCACAAGGGGATGTAGTTTTGCTTGTGATACCAAATTCCATTTTCTATCCCATTATTCTTTTGGGTGTCCTGTATTTGGGAGCAGTTATTACAACCATGTTTCCTCAAAGCAGTTCCGCAGAAATCAAGAAACGAACCAGTGATTGCAATGTGCGTTTCGCTTTTACAATGACTCAGAAAATTAAGAATTTTGAAGCACTGGGAATTCAGGCAATTGGGGTACCAGAAAATACGAATTTGGACTTGATGAGGCCTATGGGATTTTCTTCTTTTTATGAGCTTATTTCAGGTGGTTCTGATTTGAATAAAAGACCAGTGATTAGACAAGAAGATACGGCTGCTATATTGTTTTCTTCAGGTACTACTGGAGTGAGCAAAGGGGTTATGTTAACACATAGAAATTTCCTATCTACGATGGAGCTTTTTGTCCGGTTTGAAGCTTCACAGTATGAATATTTGCCTACAGAGAATGTGTATTTGGCTGCTATACCAATGTTTCATATATATGGTCTCTCCATTTTTGTGATGGGATTAATGTCATTGGGGTCTAGTGTTGTTGTAATGAGCAAATTTGATGTCAAAGAGGTGGTCAAGGCTATTGACAGATTTAAAGTCACACATTTTCCAGTTGTTCCACCAATAATGACAACTATGGCTAGGACTGCAGAGAAAATTGGTGTCCATAGATTTAGAAGTTTGAAACAAGTTTCTTGTGGGGCTGCTTCTTTGAACAAGAAGACCATTGACGATTTTGTGCAGGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACTGAGTCCACAGCTGTAGGAACCCGCGGCTTCAATACCAAAAATATTAGAAATTATTTGTCAGTGGGACTTTTAGCTCCAAACACAGAAGCTAAAGTAGTTGATTGGGTTACCGGATCTTTCGTGCCTCCTGGTAAAACTGGCGAACTTTTGTTACGCGGACCTGGTTCAATGAAAGGGTACTTGAATAATCCAGAGGCAACAATGTCCACAATAGACCAAGAAAATTGGCTACATACTGGAGACATTGTCTACTTTGACCGAGAAGGATACTTATATGTTGTTGACCGTTTGAAGGAGGTTATAAAGTATAAAGGCTTTCAGATTGCTCCTACTGATTTAGAAGCTGTGGTGATCACACATCCAGAAGTTCTTGATACTGCAGTAACAGCGGCCAAAGATGAAGAATGTGGAGAGATTCCAGTGGCATTTGTGGTAAAGAAGCCAGGAAGCACACTCTCACAAAAAGATGTTATTGATTATGTTGCTCAACAGGTTGCACCATATAAAAAAATCAGAAAAGTGGTTTTTACAGAATCAATACCAAAATCTGCTGCTGGCAAAGTACTTCGTAAGGAACTGGGGAAGTATATGCCTTCTAAACTATGA 1725 40.0 MAPLLNDHFSFQTPENEAVITKNIPRSEHTNKYPTWYSPDTGICRSVHAPREVPSDPFLDVVSFIFSFQHNGHSALIDSSTGNSISYREMFRMVKSVASGLHKLGISQGDVVLLVIPNSIFYPIILLGVLYLGAVITTMFPQSSSAEIKKRTSDCNVRFAFTMTQKIKNFEALGIQAIGVPENTNLDLMRPMGFSSFYELISGGSDLNKRPVIRQEDTAAILFSSGTTGVSKGVMLTHRNFLSTMELFVRFEASQYEYLPTENVYLAAIPMFHIYGLSIFVMGLMSLGSSVVVMSKFDVKEVVKAIDRFKVTHFPVVPPIMTTMARTAEKIGVHRFRSLKQVSCGAASLNKKTIDDFVQALPHVDFIQGYGMTESTAVGTRGFNTKNIRNYLSVGLLAPNTEAKVVDWVTGSFVPPGKTGELLLRGPGSMKGYLNNPEATMSTIDQENWLHTGDIVYFDREGYLYVVDRLKEVIKYKGFQIAPTDLEAVVITHPEVLDTAVTAAKDEECGEIPVAFVVKKPGSTLSQKDVIDYVAQQVAPYKKIRKVVFTESIPKSAAGKVLRKELGKYMPSKL 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3575989 3579721 - CrPI670011_07g005810.1 Cre07g0581 503162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0581 574 ProSitePatterns Putative AMP-binding domain signature. 221 232 IPR020845 -
Cre07g0581 574 SUPERFAMILY Acetyl-CoA synthetase-like 69 569 - -
Cre07g0581 574 Gene3D - 472 571 IPR045851 -
Cre07g0581 574 FunFam 4-coumarate--CoA ligase 2 472 573 - -
Cre07g0581 574 Pfam AMP-binding enzyme C-terminal domain 486 560 IPR025110 -
Cre07g0581 574 CDD 4CL 53 566 - -
Cre07g0581 574 Pfam AMP-binding enzyme 70 434 IPR000873 -
Cre07g0581 574 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 37 566 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
Cre07g0581 574 FunFam Long-chain-fatty-acid--CoA ligase FadD 49 471 - -
Cre07g0581 574 Gene3D - 47 471 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2316 Cre-Chr5:34722561 Cre07g0581 Cre-Chr7:3575989 1.30E-107 dispersed
Cre07g0581 Cre-Chr7:3575989 Cre10g2123 Cre-Chr10:35815935 3.90E-99 dispersed
Cre07g0581 Cre-Chr7:3575989 Cre10g1429 Cre-Chr10:27987157 9.40E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0581 K01904 - csv:101219578 1007.67