Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0585 ATGGAGCGGAATTACCCGTATGAGAATGGAGTGATGATGACGAGAGACCCGAAACCAAGGCTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTCTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGCCATTTGCAGAAATATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAAGAATGAAAGCAGTGGGACTCTTAGCAATTTCACCGGTGTAGAGGAAGATGACAGAGGGATGCAAATTGCCGAGGCTCTAAAATCACATGTTGAAGTGCAGAAAACAATACTAGAACAACTAGAGGTACAAAATAAACTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTCGCCATTGGCAGTAACCTTGGTAGTATTGAAAGCACAGGAATGCAGTTAATAAACTTTGATGCGGCTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATGAGAGGAGGCATAGCAGACGTAAATGGTGTTTGTAAGAAGACCAATGATTCACTCATCCAGATATGCAAAGTGGAAGCTGGAGAAGAAGCTACAATAAACGAGTTTAATGTTGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGCGGCTATGATTACAGTGCAAACGCGGCTGAAATACTTGACGCCAAAGTACTTCCTTGTTCAAGGTAA 786 41.35 MERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQKNESSGTLSNFTGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAIGSNLGSIESTGMQLINFDAALSDQIEKFKKQEMRGGIADVNGVCKKTNDSLIQICKVEAGEEATINEFNVEKNMINFDLNSKGGYDYSANAAEILDAKVLPCSR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3622578 3626001 + CrPI670011_07g005850.1 Cre07g0585 503166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0585 261 Pfam Myb-like DNA-binding domain 20 71 IPR001005 -
Cre07g0585 261 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677(InterPro)
Cre07g0585 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cre07g0585 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 240 IPR046955 GO:0003700(InterPro)
Cre07g0585 261 Gene3D - 17 74 - -
Cre07g0585 261 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Cre07g0585 261 FunFam Myb family transcription factor 17 75 - -
Cre07g0585 261 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0492 Cre-Chr7:2729024 Cre07g0585 Cre-Chr7:3622578 2.10E-25 dispersed
Cre07g0585 Cre-Chr7:3622578 Cre10g1479 Cre-Chr10:28623454 1.30E-28 dispersed
Cre07g0585 Cre-Chr7:3622578 Cre01g0200 Cre-Chr1:1398275 8.50E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53990 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0585 - - - 0.0