Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0601 ATGTTTAATTCCTTATGCTTCTTCTTCTTCATTCTATTAGTTCACTGTAAATCTTCTGAAATTGCTGGAGGTGGTCGTAGATTGCTTCATCAACCATTTTTCCCACTTGATTCTGTTCCTCCGGCGGAGCCGCCGTCGACTCCGGTACCACCGCCACCGAATCCCAAGTACCCATTTTCCACTACCCCTCCTACTAATCCTGATGGGTCTCCATTTTTTCCGACGTATCCTGGAACCCCACCTCCTCCGGCGCCGGCGAGTTTCGCATCGTTTCCGGCTAATATTTCTTCTCTGATTCTACCTCATTCGTCTCAGTCTGGTTCAGCTTCTAAGAAGGTTGTTTCGTTGGTTGTTGCTGGGGTTGTTTCCGTTGTCTTGGTTGTCTGCATTGCTGGGTTTTTGTACTGGCGGAGACGGCGTGGTCGTGGGTTGGGCGATGACAAGACGTACAGATCCGAAAATAGTAGCCGGTTGTGTCCGGTTCCGAATGTTGAAGTCGGTAATGGAATCCCTAAGTTGAGACATCCCTCTGCTACTAGCTCTGAGTTTCTGTATTTGGGTACTCTTGTGAACTCGAGAGCGATCGATGAGCGTTCCGTTGGGGGAGCTCGTGTTGCTGATCCTAGGTCGTTGGATTCGCCGGAGCTTCATCCGCTTCCGCCGTTGAATTTTGGTCGGTCGAGTGAGAAGCAAAATTGTGGAAATGGAGAGGAGAGATCGATGGGAGATGAGGAGGAAGAGGAATTTTACTCTCCTAAAGGTTCTCTCGGCGCAATTGGTTCGGGATCTCGAAGAGTGCTCGCAACAATGGCGGCTGAAGATTTGCTTGGCAAAACCAGCGATTCGAGCACTACTTCGTATTCCACATCCAGCGGTTCCGTTTCGCCGGCGAGATCACGTTCTAAGAGTCTCTCTCTATCTCCACCGGCGAGTTTGAGCCCAAGAAGATCCGTTCAAAATGAATCTTCTAATTTCTCTGTTTCTGCCACTGTAGCGACGGAGCAAAATTCACCGCCATTGACGCCGCCGCTTTCCCACGCCGGGGTGGAATCAGACGACGGCGTTAAATCCCATTGCCCATCTCCAATGCGTTTATCGACGGATAAAGTTCCAGAGAAAAGCTCCACCGCATCTTCATCCCGGAGGTATTCTAATGTTTCAGTTCACAGTGTGATGTTCCCAATTTCAACAACCGCTAAGGATTTAGTTAATCATGACGATACGAGCAATAATCACGAAGAATCTCCAAGACAATCCCATAATTCAGATCCAGACGAGCCGTTTCCATTTTCTCCTTGTTTATTTCCTCTTTCAGATGGAATTTTAGGGCAAATTCAGATTCAATTGCCCACGGTTTCAAACATTCCCGATTCCGATTCTGAAGCAAAACTTAAGCAACTTCCTTACTCCTTTACTTCATCTTCACCTTCATCGTCGCCGGAGAGAGTAGTTATGGACTCATCTCCGTCAAGAACATCCATTATTTCAGATCAAAACAGGTCTTCTCCACCATCACCAGAGAGAATTGTGTTTAGTGATTCAGATTCATCAAAGAGAACTCTAGACCATTTTGATCAAGATGTGAAATCTTCTTCTGCTGACATCAATACCACTGATGTGGGTCCGCTGCAATCTCCTTCTACCGCTCCTCCGCCACCTCCCCCACCTCCCCCCCCGCCCCCGCCTCCCCCACCACCCCCGCCACCGGTAGCCCCTCTGCCAGAACGCTGGGAAATGCCCATTTCTCCTTCTACACCAATGGACCAATCCATTCCAAAGGCGCCTCCTCCATTAGTGCCTCCATTAAGGCCATTTATGATGGAGAATGTGAAAAATGTCTCACCAATTCAGTTGCCATCCTGCAAAAGCAATGGCGAATCATCTGAAGACACCCCCAAGCCCAAGTTGAAGCCATTGCATTGGGACAAAGTAAGGGCCAGTTCTGATCGTGAGATGGTGTGGGATCAACTCAGATCAAGCTCTTTTAAAGTGAATGAGGAAATGATTGAAACTCTGTTTGTTGTGAACACTTCCAACTCAAAGGAGACAACTCCACGCACCGTGCTTCCTCCACCTAACCAAGAGATCGGAGTTCTCGATCCCAAAAAGTCGCAGAACATTGCAATTGCGTTACGGGCGCTTAATGTGACCATAGAAGAAGTTTGTGATGCCCTTTTAGAAGGTAATGCAGATGCACTTGGAGCAGAGCTACTTGAAAGTTTATTGAAGATGGCTCCAACAAAAGAAGAAGAACGTAAACTAAAGGCATCCAAGGATGTCTCACCTACAAAGTTTGGCCCTGCTGAGAAATTTTTGAAGGCAGTCCTTGATGTTCCTTTTGCATTTAAAAGGGTGGATGCAATGCTTTACATAGCAAATTTCGAGTCCGAGATTGAGTACCTAAAGAAATCATTCGAAAATCTTGAGACTGCTTGCGAGGAATTGAGGAATAGCAGGATGTTCTTGAAACTTTTGGAAGCTGTGCTCAAGACCGGGAATCGGATGAATGTTGGCACCAACCGCGGTGATGCCCATGCCTTCAAACTTGACACACTTTTGAAGCTTGTTGATGTCAAGGGTGCAGATGGAAAAACCACTCTTCTGCATTTTGTTGTACAAGAAATCATAAGAAGTGAAGGAGCTCGTCTTTGTGTCACGAGTCAAATTCCGAACTCCAACCCGAGTGATGATGCCAAATGCAGGAAACTCGGCCTGCAAGTTGTATCGGGTCTCAGCTCGGAGCTTGCCAACGTAAAGAAGGCAGCTTCAATGGATTCCGATGTGCTCAGTGGCGAGGTCATCAAGCTTTCGAGAGGACTCGACAACATCAGAGAGGCTCTACGTCTAAACGAAGCAGACGGGCCAAACGAAAGCACAGAAAAGTTCTCAGAGTCAATGAGTAGATTCTTGAAAATGGCAGAAGAGGATATCATCAGAGTCCAAGCCCATGAAAGTGTTGCTTTATCTCTAGTAAAGGAGATCACAGAGTACTTCCATGGCAACTCTGCCAAAGAAGAAGCTCATCCATTTAGAATTTTCATGGTGGTGAGAGATTTCCTAACAATTCTTGATGGAGTCTGCAAAGAAGTCGGAATGATAAATGAGCGGACGATTGTAAGTTCTGCCCATAAATTTCCAGTTCCAGTGAATCCAACATTACCACAAGCATTTCAAGCTCTTCATAGAGTGCAGAAATACAATTCTTCTGATGAAGAAAGTGAACAATCCCCATAA 3234 46.6 MFNSLCFFFFILLVHCKSSEIAGGGRRLLHQPFFPLDSVPPAEPPSTPVPPPPNPKYPFSTTPPTNPDGSPFFPTYPGTPPPPAPASFASFPANISSLILPHSSQSGSASKKVVSLVVAGVVSVVLVVCIAGFLYWRRRRGRGLGDDKTYRSENSSRLCPVPNVEVGNGIPKLRHPSATSSEFLYLGTLVNSRAIDERSVGGARVADPRSLDSPELHPLPPLNFGRSSEKQNCGNGEERSMGDEEEEEFYSPKGSLGAIGSGSRRVLATMAAEDLLGKTSDSSTTSYSTSSGSVSPARSRSKSLSLSPPASLSPRRSVQNESSNFSVSATVATEQNSPPLTPPLSHAGVESDDGVKSHCPSPMRLSTDKVPEKSSTASSSRRYSNVSVHSVMFPISTTAKDLVNHDDTSNNHEESPRQSHNSDPDEPFPFSPCLFPLSDGILGQIQIQLPTVSNIPDSDSEAKLKQLPYSFTSSSPSSSPERVVMDSSPSRTSIISDQNRSSPPSPERIVFSDSDSSKRTLDHFDQDVKSSSADINTTDVGPLQSPSTAPPPPPPPPPPPPPPPPPPPPVAPLPERWEMPISPSTPMDQSIPKAPPPLVPPLRPFMMENVKNVSPIQLPSCKSNGESSEDTPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKVNEEMIETLFVVNTSNSKETTPRTVLPPPNQEIGVLDPKKSQNIAIALRALNVTIEEVCDALLEGNADALGAELLESLLKMAPTKEEERKLKASKDVSPTKFGPAEKFLKAVLDVPFAFKRVDAMLYIANFESEIEYLKKSFENLETACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRSEGARLCVTSQIPNSNPSDDAKCRKLGLQVVSGLSSELANVKKAASMDSDVLSGEVIKLSRGLDNIREALRLNEADGPNESTEKFSESMSRFLKMAEEDIIRVQAHESVALSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLTILDGVCKEVGMINERTIVSSAHKFPVPVNPTLPQAFQALHRVQKYNSSDEESEQSP 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3841222 3845611 + CrPI670011_07g006010.1 Cre07g0601 503182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0601 1077 MobiDBLite consensus disorder prediction 278 342 - -
Cre07g0601 1077 Pfam Formin Homology 2 Domain 628 1023 IPR015425 -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 405 421 - -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 469 598 - -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 530 544 - -
Cre07g0601 1077 PANTHER FORMIN-RELATED 426 1071 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cre07g0601 1077 MobiDBLite consensus disorder prediction 512 529 - -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 40 70 - -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 469 511 - -
Cre07g0601 1077 SUPERFAMILY Formin homology 2 domain (FH2 domain) 559 1034 - -
Cre07g0601 1077 SMART it6_source 626 1038 IPR015425 -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 616 637 - -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 198 256 - -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 278 383 - -
Cre07g0601 1077 Coils Coil 791 818 - -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 402 430 - -
Cre07g0601 1077 ProSiteProfiles Formin homology-2 (FH2) domain profile. 626 1049 IPR015425 -
Cre07g0601 1077 Gene3D Formin, FH2 domain 631 1044 IPR042201 -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 545 576 - -
Cre07g0601 1077 MobiDBLite consensus disorder prediction 368 383 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0601 K28090 - - csv:101211678 1685.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1531 Cre-Chr2:27636147 Cre07g0601 Cre-Chr7:3841222 2.00E-145 dispersed
Cre05g1650 Cre-Chr5:27306911 Cre07g0601 Cre-Chr7:3841222 9.60E-102 dispersed
Cre07g0601 Cre-Chr7:3841222 Cre11g0591 Cre-Chr11:3007334 4.10E-166 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre07g0601 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 51.8 1.6e-191 667.2
Cre11g0591 . 454 930 FH2 protein (formin) Gene Family AT3G25500 66.7 3.1e-166 583.2
Cre02g1531 . 438 894 FH2 protein (formin) Gene Family AT3G25500 60.1 9.0e-142 501.9
Cre03g1973 . 494 891 FH2 protein (formin) Gene Family AT3G25500 51.7 3.3e-104 377.1
Cre07g0601 . 618 1072 FH2 protein (formin) Gene Family AT2G43800 60.3 5.9e-142 502.3
Cre02g1531 . 472 910 FH2 protein (formin) Gene Family AT2G43800 55.1 1.0e-125 448.4
Cre02g1167 . 279 591 FH2 protein (formin) Gene Family AT4G15200 51.9 2.1e-50 197.2
Cre05g1650 . 553 699 FH2 protein (formin) Gene Family AT4G15200 66.7 4.8e-47 186.0
Cre05g1650 . 554 990 FH2 protein (formin) Gene Family AT5G54650 69.2 2.1e-168 590.1
Cre02g1167 . 452 908 FH2 protein (formin) Gene Family AT5G54650 63.2 4.5e-158 555.8
Cre07g0601 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.8 3.2e-103 373.6
Cre02g1531 . 31 913 FH2 protein (formin) Gene Family AT5G67470 58.1 6.3e-237 817.8
Cre07g0601 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.9 1.1e-135 481.5
Cre11g0591 . 467 912 FH2 protein (formin) Gene Family AT5G67470 60.6 9.4e-132 468.4
Cre03g1973 . 494 893 FH2 protein (formin) Gene Family AT5G67470 50.9 1.7e-104 377.9
Cre05g2663 . 349 832 FH2 protein (formin) Gene Family AT1G59910 51.6 1.0e-125 448.4
Cre07g0601 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.6 4.4e-101 366.3
Cre02g1531 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.5 1.7e-89 327.8
Cre02g1531 . 476 870 FH2 protein (formin) Gene Family AT3G05470 52.0 3.9e-106 383.3
Cre05g1650 . 559 973 FH2 protein (formin) Gene Family AT3G05470 50.5 6.7e-106 382.5
Cre07g0594 . 974 1285 FH2 protein (formin) Gene Family AT1G42980 51.1 2.2e-69 259.6
Cre07g0594 . 1 1292 FH2 protein (formin) Gene Family AT1G31810 67.2 0.0e+00 1225.7
Cre06g2459 . 1393 1714 FH2 protein (formin) Gene Family AT5G07650 74.8 1.7e-129 460.7
Cre01g1538 . 980 1290 FH2 protein (formin) Gene Family AT5G07650 70.1 2.8e-119 426.8
Cre05g1800 . 1086 1408 FH2 protein (formin) Gene Family AT5G07650 64.7 1.2e-109 394.8
Cre06g2103 . 936 1255 FH2 protein (formin) Gene Family AT5G07650 62.6 3.4e-109 393.3
Cre07g0594 . 958 1289 FH2 protein (formin) Gene Family AT5G07650 59.6 4.9e-108 389.4
Cre06g2459 . 1320 1707 FH2 protein (formin) Gene Family AT5G07770 69.2 1.6e-140 496.9
Cre01g1538 . 903 1290 FH2 protein (formin) Gene Family AT5G07770 63.0 7.0e-128 454.9
Cre05g1800 . 1010 1400 FH2 protein (formin) Gene Family AT5G07770 59.2 3.0e-118 422.9
Cre06g2103 . 859 1247 FH2 protein (formin) Gene Family AT5G07770 57.3 4.7e-116 415.6
Cre07g0594 . 894 1283 FH2 protein (formin) Gene Family AT5G07770 55.2 4.0e-115 412.5
Cre05g1800 . 1002 1408 FH2 protein (formin) Gene Family AT3G32400 76.4 2.2e-170 595.9
Cre06g2103 . 866 1256 FH2 protein (formin) Gene Family AT3G32400 69.2 3.0e-148 522.3
Cre06g2459 . 1320 1714 FH2 protein (formin) Gene Family AT3G32400 65.2 9.4e-142 500.7
Cre07g0594 . 894 1288 FH2 protein (formin) Gene Family AT3G32400 65.5 1.4e-140 496.9
Cre01g1538 . 873 1293 FH2 protein (formin) Gene Family AT3G32400 57.8 2.0e-131 466.5
Cre05g1800 . 1 1408 FH2 protein (formin) Gene Family AT2G25050 51.1 0.0e+00 1154.0
Cre06g2103 . 1 1256 FH2 protein (formin) Gene Family AT2G25050 54.3 9.5e-294 1006.9
Cre06g2459 . 1321 1714 FH2 protein (formin) Gene Family AT5G07780 63.0 1.9e-123 439.9
Cre01g1538 . 904 1293 FH2 protein (formin) Gene Family AT5G07780 57.9 5.1e-113 405.2
Cre05g1800 . 1011 1401 FH2 protein (formin) Gene Family AT5G07780 54.0 8.1e-103 371.3
Cre07g0594 . 895 1284 FH2 protein (formin) Gene Family AT5G07780 52.0 1.2e-101 367.5
Cre06g2103 . 866 1255 FH2 protein (formin) Gene Family AT5G07780 53.8 2.0e-101 366.7
Cre06g2459 . 1 1723 FH2 protein (formin) Gene Family AT5G07740 60.9 0.0e+00 1122.5
Cre06g2459 . 1392 1721 FH2 protein (formin) Gene Family AT5G07760 74.4 3.6e-128 456.4
Cre01g1538 . 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.3 6.3e-117 419.1
Cre06g2103 . 935 1255 FH2 protein (formin) Gene Family AT5G07760 64.7 7.5e-110 395.6
Cre05g1800 . 1085 1417 FH2 protein (formin) Gene Family AT5G07760 63.7 3.7e-109 393.3
Cre07g0594 . 968 1295 FH2 protein (formin) Gene Family AT5G07760 59.3 4.2e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010763 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 32