Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0603 ATGACTCTATTTTCATTTTCATTCTTGTTCGTAGTACTTCTTCAGTTATCTTTTCTGTTTAATAGTCTGACTGCCAAAAACGGCGACCACCACCACCACCACCACCATGTCCGATCACCAGGACTGAACCCGAACCCGAACCCGAACCCAAGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAATGTCATTTACTCGGACCCAAAAAACCACACTACCAATTGGGTGGGGCCATCAGTTTGCAACTACTTTGGAGTGTATTGTGCCCCATCTCTTGATGACCCAAAAATCCAAGTGGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGATCTTGCTCTGCTTCATCTCAACAGCAACCGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTAGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCTGTTGTTCTTCTCCTTCCAAAATTAACATATCTTGATCTTCGATTCAACGAATTTGAAGGCCCAATTCCCTCTGAACTCTTCAACAAAACCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCCGCAATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCTGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAATGGGTCCTTTGCCTTATAGTTTAGCTGGGTTAGCTCAATTGGAGCAATTGAATTTAGCCCATAATTTGTTTAGTGGGAATTTGTATGAAGGTATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTTCTTATAATTACTTTTGTGAAGAAGAAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGCTTGCCGGAGAAGCCGTTGCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGAGGTAATGGTTCTAGTATTGCGGCGGTTCCGGCTCCGACGCCAATTTCTTCACCTTCTTCCTTTGTTGCCCCTTCCCACTTGTGA 1230 43.66 MTLFSFSFLFVVLLQLSFLFNSLTAKNGDHHHHHHHVRSPGLNPNPNPNPRLHQAFLALQAWKNVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLTYLDLRFNEFEGPIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPAIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLAGLAQLEQLNLAHNLFSGNLYEGICSLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVERPVDCFEHPCGGGGGNGSSIAAVPAPTPISSPSSFVAPSHL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3860520 3861749 - CrPI670011_07g006030.1 Cre07g0603 503184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0603 409 SUPERFAMILY L domain-like 54 329 - -
Cre07g0603 409 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 395 IPR051582 -
Cre07g0603 409 MobiDBLite consensus disorder prediction 389 409 - -
Cre07g0603 409 MobiDBLite consensus disorder prediction 391 409 - -
Cre07g0603 409 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515(InterPro)
Cre07g0603 409 Pfam Leucine Rich Repeat 268 290 IPR001611 GO:0005515(InterPro)
Cre07g0603 409 Pfam Leucine Rich Repeat 150 166 IPR001611 GO:0005515(InterPro)
Cre07g0603 409 Pfam Leucine Rich Repeat 173 194 IPR001611 GO:0005515(InterPro)
Cre07g0603 409 Pfam Leucine Rich Repeat 128 147 IPR001611 GO:0005515(InterPro)
Cre07g0603 409 Gene3D Ribonuclease Inhibitor 221 343 IPR032675 -
Cre07g0603 409 Gene3D Ribonuclease Inhibitor 55 220 IPR032675 -
Cre07g0603 409 FunFam Leucine-rich repeat extensin-like protein 1 56 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0603 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0603 Cre-Chr5:5374679 Cre07g0603 Cre-Chr7:3860520 1.30E-45 dispersed
Cre07g0603 Cre-Chr7:3860520 Cre11g0739 Cre-Chr11:4543837 2.00E-28 dispersed
Cre07g0603 Cre-Chr7:3860520 Cre06g1872 Cre-Chr6:25183274 1.70E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0603 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.1 2.1e-47 188.0
Cre11g0739 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 1.2e-42 172.2
Cre07g0603 . 52 378 Leucine-rich Repeat extension Gene Families AT1G62440 58.7 3.5e-42 170.6
Cre06g1872 . 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.2 1.5e-40 165.2
Cre11g0739 . 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 5.3e-67 253.1
Cre06g1872 . 15 402 Leucine-rich Repeat extension Gene Families AT4G13340 74.6 6.9e-67 252.7
Cre05g0603 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 71.3 3.2e-56 217.2
Cre07g0603 . 51 379 Leucine-rich Repeat extension Gene Families AT4G13340 62.7 1.0e-41 169.1
Cre06g1120 . 21 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.1 1.6e-39 161.8
Cre06g1119 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.0 4.6e-39 160.2
Cre06g1116 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.0 1.3e-38 158.7
Cre06g1115 . 22 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.9 8.7e-38 156.0
Cre06g1872 . 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 2.7e-72 270.0
Cre11g0739 . 37 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 7.9e-72 268.5
Cre05g0603 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 68.4 1.1e-54 211.5
Cre07g0603 . 51 400 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 1.2e-43 174.9
Cre06g1120 . 25 393 Leucine-rich Repeat extension Gene Families AT3G24480 51.7 2.7e-40 163.7
Cre06g1119 . 25 393 Leucine-rich Repeat extension Gene Families AT3G24480 50.1 7.9e-40 162.2
Cre05g0603 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 71.6 4.5e-69 259.2
Cre07g0603 . 51 378 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 6.8e-49 192.2
Cre06g1872 . 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 2.7e-37 153.7
Cre06g1872 . 47 402 Leucine-rich Repeat extension Gene Families AT5G25550 60.5 5.9e-39 159.1
Cre11g0739 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.3e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28