Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0603 ATGACTCTATTTTCATTTTCATTCTTGTTCGTAGTACTTCTTCAGTTATCTTTTCTGTTTAATAGTCTGACTGCCAAAAACGGCGACCACCACCACCACCACCACCATGTCCGATCACCAGGACTGAACCCGAACCCGAACCCGAACCCAAGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAATGTCATTTACTCGGACCCAAAAAACCACACTACCAATTGGGTGGGGCCATCAGTTTGCAACTACTTTGGAGTGTATTGTGCCCCATCTCTTGATGACCCAAAAATCCAAGTGGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGATCTTGCTCTGCTTCATCTCAACAGCAACCGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTAGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCTGTTGTTCTTCTCCTTCCAAAATTAACATATCTTGATCTTCGATTCAACGAATTTGAAGGCCCAATTCCCTCTGAACTCTTCAACAAAACCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCCGCAATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCTGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAATGGGTCCTTTGCCTTATAGTTTAGCTGGGTTAGCTCAATTGGAGCAATTGAATTTAGCCCATAATTTGTTTAGTGGGAATTTGTATGAAGGTATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTTCTTATAATTACTTTTGTGAAGAAGAAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGCTTGCCGGAGAAGCCGTTGCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGAGGTAATGGTTCTAGTATTGCGGCGGTTCCGGCTCCGACGCCAATTTCTTCACCTTCTTCCTTTGTTGCCCCTTCCCACTTGTGA 1230 43.66 MTLFSFSFLFVVLLQLSFLFNSLTAKNGDHHHHHHHVRSPGLNPNPNPNPRLHQAFLALQAWKNVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLTYLDLRFNEFEGPIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPAIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLAGLAQLEQLNLAHNLFSGNLYEGICSLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVERPVDCFEHPCGGGGGNGSSIAAVPAPTPISSPSSFVAPSHL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3860520 3861749 - CrPI670011_07g006030.1 Cre07g0603 503184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0603 409 SUPERFAMILY L domain-like 54 329 - -
Cre07g0603 409 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 395 IPR051582 -
Cre07g0603 409 MobiDBLite consensus disorder prediction 389 409 - -
Cre07g0603 409 MobiDBLite consensus disorder prediction 391 409 - -
Cre07g0603 409 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515(InterPro)
Cre07g0603 409 Pfam Leucine Rich Repeat 268 290 IPR001611 GO:0005515(InterPro)
Cre07g0603 409 Pfam Leucine Rich Repeat 150 166 IPR001611 GO:0005515(InterPro)
Cre07g0603 409 Pfam Leucine Rich Repeat 173 194 IPR001611 GO:0005515(InterPro)
Cre07g0603 409 Pfam Leucine Rich Repeat 128 147 IPR001611 GO:0005515(InterPro)
Cre07g0603 409 Gene3D Ribonuclease Inhibitor 221 343 IPR032675 -
Cre07g0603 409 Gene3D Ribonuclease Inhibitor 55 220 IPR032675 -
Cre07g0603 409 FunFam Leucine-rich repeat extensin-like protein 1 56 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0603 Cre-Chr5:5374679 Cre07g0603 Cre-Chr7:3860520 1.30E-45 dispersed
Cre07g0603 Cre-Chr7:3860520 Cre11g0739 Cre-Chr11:4543837 2.00E-28 dispersed
Cre07g0603 Cre-Chr7:3860520 Cre06g1872 Cre-Chr6:25183274 1.70E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0603 - - - 0.0