Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0609 ATGAGCAGCGTTTGTGCGGAGCAACAGAAATTTCAATTTCAATTTCAATTTCCGTCTTCTGCTTCTGCTGCTTCTTCTTCGTGTTCTTCGTGTTTTCTTAAGGATATTAACGTTCCGCCGAGGAAGCTTGTTGCTGCGGTGAGACGAGAAAACGGTGAAATGTGTTCTGATTCGCCGCGGTTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTTAATGGCGAGGATGAAGCGGAGGAGGATGGAGATCCGTATTCGTCAGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCAGGAGAGAAGGCACGGAGGCGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGAGTTTCGTCGCGGCGGTTGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAATGTTGGCTTCATCCCGCGAGGTATCGTACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCTCCTGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCACCGAATAAGAGAAATTCTGGTCTTAGATCGGCCACTTCCGGTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCACTTCCTCACCGACTTCAACGCTTTTCGGAATGTCTCATCTGTCTCCGCCACACTCTCCGCCGCTCTCGCCGGGAAAACCTCGGTCATCGATTAATGGATTTTCACCGATTTCGAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTGATGAGCTCAATTGAATCCATGAATATCGACGACGCCAATGCCACTTTAGCCGCCGCTGCCGCCGCCGCCGCCACTCCAAGACAGACGATTCCTTGGATCGATGTTTCATCTCTCAACTCTGAAGATCAACTGCAGTTTGTTCTCTCACCTTCTACTCCAAACGTGTCCGTCGAGAACAAAGGTAACCCCGACAATGGATGGGCCTCCTCCTCCGATCCGGATCTTGGATGGGTTAATGATCTGCTGATCCCTAATTTGATTTTGCTCTCTCTCTGCTCTCTGCTCTCCGTCACAATCGCAAGCAAAGCTTCAAACAAGTTCAATTTCTCAGTTCGCACCATCTTCTAG 1239 48.02 MSSVCAEQQKFQFQFQFPSSASAASSSCSSCFLKDINVPPRKLVAAVRRENGEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRNSGLRSATSGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKPRSSINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAAAAAATPRQTIPWIDVSSLNSEDQLQFVLSPSTPNVSVENKGNPDNGWASSSDPDLGWVNDLLIPNLILLSLCSLLSVTIASKASNKFNFSVRTIF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3900216 3904965 + CrPI670011_07g006090.1 Cre07g0609 503190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0609 412 MobiDBLite consensus disorder prediction 262 277 - -
Cre07g0609 412 Gene3D - 132 195 - -
Cre07g0609 412 ProSiteProfiles Zinc finger C3H1-type profile. 133 159 IPR000571 GO:0046872(InterPro)
Cre07g0609 412 FunFam Zinc finger CCCH domain-containing protein 66 90 158 - -
Cre07g0609 412 PANTHER UNKEMPT FAMILY MEMBER 59 325 IPR045234 -
Cre07g0609 412 SMART c3hfinal6 132 158 IPR000571 GO:0046872(InterPro)
Cre07g0609 412 SMART c3hfinal6 167 190 IPR000571 GO:0046872(InterPro)
Cre07g0609 412 MobiDBLite consensus disorder prediction 247 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0609 Cre-Chr7:3900216 Cre11g0685 Cre-Chr11:3909882 4.60E-57 dispersed
Cre07g0609 Cre-Chr7:3900216 Cre05g1935 Cre-Chr5:31535587 1.20E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53994 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0609 K23047 - csv:101211149 590.497