Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0616 ATGATTTCGAGATCTTACACAAATCTTTTAGATTTAGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGATTTCCGCGAGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAGGCTTACAGTGTGACATCTGAAAACCCATCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTACCTTTAAGAGCAAAGCGAAGGGAGGATGATAATTCGTGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCCGAAGATATGGAGGTTCTTTACGTTGGTTCGCTGAAAGTCGATATCCAACCAGAAGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTCGATCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTAATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTGAACTCTGATATCATTGGATTTCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTTGGTATTCATATGAGTCGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACGAGGGAACTCACACAACAATTTGCAGGGAAAACGGTGTTGCTTGGTGTCGACGATTTGGACATTTTTAAAGGTATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCGAAGTGGCAGGGAAAGGCTGTACTCATCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGAGATCTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTACGAGCCAATAGTACTTCTCGACAGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTCACTGCTGTTAGAGATGGCATGAACCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTTCCAAAAATGTTTAAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATTGGATGTTCTCCATCACTGAGTGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGTCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTATGTTGCTACACACGATGTGGCTTATTGGTCTCGTAGTTTCTTACAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCGTCTTACAGTAGGGCCGAAAGTCGGGCTATTCTGTTGGACTATGATGGCACTGTGATGCCCCAAAACTCCATAAATAAGTCACCGAGTGAGCAGGTTATCTCTATCCTTAACACCCTTTGTGCAGATGCAAAAAATGTGGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGCAGTCGCAAAATGAGGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTTATGAAATTGTATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTATCGAGATGCAGATCCTGGTTTCGGATCATCCCAGGCAAAGGAAATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTAGCAGTCAAAAGTGGCCAGTTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGGCTAGTGGCTGAAAAGATCTTTTCATCAATGGCGGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGCATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCGTTGTCCAGTAACATTCTTTCTCCAACGACATCGGTTTTTGCCTGCACTGTTGGACAGAAGCCAAGCAAAGCCAAATATTATTTAGATGACACAGCTGAAGTAATAAGTATGCTTGAATACCTGGCTGAAGCGTCTAGCCCATTGCCATCCTCGGACGATGAAGAAGGTGAAAATGCTTCTTGA 2571 42.55 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPEEQDEVSQILLEKFRCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTFQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVERTAEALNEAISMSDSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3955023 3958259 - CrPI670011_07g006160.1 Cre07g0616 503197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0616 856 CDD HAD_TPP 591 830 - -
Cre07g0616 856 Gene3D Glycogen Phosphorylase B; 53 313 - -
Cre07g0616 856 SUPERFAMILY HAD-like 590 838 IPR036412 -
Cre07g0616 856 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cre07g0616 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Cre07g0616 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cre07g0616 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Cre07g0616 856 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
Cre07g0616 856 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 850 - -
Cre07g0616 856 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
Cre07g0616 856 NCBIfam trehalose-phosphatase 588 838 IPR003337 GO:0005992(InterPro)
Cre07g0616 856 Gene3D Glycogen Phosphorylase B; 314 527 - -
Cre07g0616 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Cre07g0616 856 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cre07g0616 856 NCBIfam HAD-IIB family hydrolase 592 796 IPR006379 -
Cre07g0616 856 Gene3D - 718 850 IPR023214 -
Cre07g0616 856 Gene3D - 589 690 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0616 Cre-Chr7:3955023 Cre11g2131 Cre-Chr11:32983854 2.70E-120 dispersed
Cre10g0401 Cre-Chr10:2861517 Cre07g0616 Cre-Chr7:3955023 0.00E+00 transposed
Cre03g0996 Cre-Chr3:8794596 Cre07g0616 Cre-Chr7:3955023 1.20E-121 wgd
Cre04g2005 Cre-Chr4:37399977 Cre07g0616 Cre-Chr7:3955023 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0616 K16055 - csv:101209914 1712.2