Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0616 ATGATTTCGAGATCTTACACAAATCTTTTAGATTTAGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGATTTCCGCGAGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAGGCTTACAGTGTGACATCTGAAAACCCATCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTACCTTTAAGAGCAAAGCGAAGGGAGGATGATAATTCGTGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCCGAAGATATGGAGGTTCTTTACGTTGGTTCGCTGAAAGTCGATATCCAACCAGAAGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTCGATCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTAATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTGAACTCTGATATCATTGGATTTCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTTGGTATTCATATGAGTCGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACGAGGGAACTCACACAACAATTTGCAGGGAAAACGGTGTTGCTTGGTGTCGACGATTTGGACATTTTTAAAGGTATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCGAAGTGGCAGGGAAAGGCTGTACTCATCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGAGATCTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTACGAGCCAATAGTACTTCTCGACAGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTCACTGCTGTTAGAGATGGCATGAACCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTTCCAAAAATGTTTAAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATTGGATGTTCTCCATCACTGAGTGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGTCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTATGTTGCTACACACGATGTGGCTTATTGGTCTCGTAGTTTCTTACAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCGTCTTACAGTAGGGCCGAAAGTCGGGCTATTCTGTTGGACTATGATGGCACTGTGATGCCCCAAAACTCCATAAATAAGTCACCGAGTGAGCAGGTTATCTCTATCCTTAACACCCTTTGTGCAGATGCAAAAAATGTGGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGCAGTCGCAAAATGAGGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTTATGAAATTGTATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTATCGAGATGCAGATCCTGGTTTCGGATCATCCCAGGCAAAGGAAATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTAGCAGTCAAAAGTGGCCAGTTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGGCTAGTGGCTGAAAAGATCTTTTCATCAATGGCGGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGCATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCGTTGTCCAGTAACATTCTTTCTCCAACGACATCGGTTTTTGCCTGCACTGTTGGACAGAAGCCAAGCAAAGCCAAATATTATTTAGATGACACAGCTGAAGTAATAAGTATGCTTGAATACCTGGCTGAAGCGTCTAGCCCATTGCCATCCTCGGACGATGAAGAAGGTGAAAATGCTTCTTGA 2571 42.55 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPEEQDEVSQILLEKFRCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTFQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVERTAEALNEAISMSDSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3955023 3958259 - CrPI670011_07g006160.1 Cre07g0616 503197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0616 856 CDD HAD_TPP 591 830 - -
Cre07g0616 856 Gene3D Glycogen Phosphorylase B; 53 313 - -
Cre07g0616 856 SUPERFAMILY HAD-like 590 838 IPR036412 -
Cre07g0616 856 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cre07g0616 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Cre07g0616 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cre07g0616 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Cre07g0616 856 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
Cre07g0616 856 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 850 - -
Cre07g0616 856 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
Cre07g0616 856 NCBIfam trehalose-phosphatase 588 838 IPR003337 GO:0005992(InterPro)
Cre07g0616 856 Gene3D Glycogen Phosphorylase B; 314 527 - -
Cre07g0616 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Cre07g0616 856 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cre07g0616 856 NCBIfam HAD-IIB family hydrolase 592 796 IPR006379 -
Cre07g0616 856 Gene3D - 718 850 IPR023214 -
Cre07g0616 856 Gene3D - 589 690 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0616 K16055 - - csv:101209914 1712.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0616 Cre-Chr7:3955023 Cre11g2131 Cre-Chr11:32983854 2.70E-120 dispersed
Cre10g0401 Cre-Chr10:2861517 Cre07g0616 Cre-Chr7:3955023 0.00E+00 transposed
Cre03g0996 Cre-Chr3:8794596 Cre07g0616 Cre-Chr7:3955023 1.20E-121 wgd
Cre04g2005 Cre-Chr4:37399977 Cre07g0616 Cre-Chr7:3955023 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g2323 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.3 1.9e-195 679.5
Cre07g0616 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 78.2 0.0e+00 1380.2
Cre04g2005 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1322.4
Cre10g0401 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cre05g2685 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1091.6
Cre06g2555 . 39 871 Trehalose Biosynthesis Gene Families AT1G06410 59.5 2.9e-300 1028.1
Cre11g2131 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 1.8e-249 859.0
Cre03g0996 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.1e-241 833.2
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.3
Cre06g2555 . 38 878 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1204.9
Cre10g0401 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1108.2
Cre07g0616 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1097.8
Cre04g2005 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1093.2
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.2
Cre06g2555 . 35 872 Trehalose Biosynthesis Gene Families AT1G60140 68.4 0.0e+00 1219.5
Cre10g0401 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.5
Cre07g0616 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.2 2.2e-313 1071.6
Cre04g2005 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 4.4e-312 1067.4
Cre10g0401 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cre04g2005 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1144.4
Cre07g0616 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1142.9
Cre05g2685 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.2
Cre06g2555 . 42 869 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1091.6
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1192.9
Cre06g2555 . 38 906 Trehalose Biosynthesis Gene Families AT1G70290 62.0 0.0e+00 1088.9
Cre07g0616 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.7 1.1e-291 999.6
Cre04g2005 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.4e-290 994.6
Cre10g0401 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 3.3e-285 978.0
Cre11g2131 . 1 942 Trehalose Biosynthesis Gene Families AT1G78580 77.9 0.0e+00 1471.4
Cre03g0996 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1360.1
Cre05g2685 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.3 7.8e-309 1056.6
Cre06g2555 . 41 871 Trehalose Biosynthesis Gene Families AT2G18700 60.0 2.0e-301 1031.9
Cre04g2005 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.8e-298 1021.5
Cre10g0401 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.8e-298 1021.5
Cre07g0616 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 3.9e-292 1001.1
Cre10g0401 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1378.6
Cre04g2005 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1162.1
Cre07g0616 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1160.6
Cre05g2685 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.2
Cre06g2555 . 42 868 Trehalose Biosynthesis Gene Families AT4G17770 62.9 0.0e+00 1102.8
Cre11g2131 . 93 942 Trehalose Biosynthesis Gene Families AT4G27550 61.3 8.4e-302 1033.1
Cre03g0996 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.4 5.3e-288 987.3
Cre11g2131 . 1 942 Trehalose Biosynthesis Gene Families AT1G78580 77.9 0.0e+00 1471.4
Cre03g0996 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1360.1
Cre11g2131 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 1.8e-249 859.0
Cre03g0996 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.1e-241 833.2
Cre11g2131 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 2.6e-194 676.0
Cre03g0996 . 100 618 Trehalose Biosynthesis Gene Families AT1G17000 61.5 3.0e-190 662.5
Cre11g2131 . 93 942 Trehalose Biosynthesis Gene Families AT4G27550 61.3 8.4e-302 1033.1
Cre03g0996 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.4 5.3e-288 987.3
Cre10g0401 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1378.6
Cre04g2005 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1162.1
Cre07g0616 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1160.6
Cre05g2685 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.2
Cre06g2555 . 42 868 Trehalose Biosynthesis Gene Families AT4G17770 62.9 0.0e+00 1102.8
Cre10g0401 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cre04g2005 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1144.4
Cre07g0616 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1142.9
Cre05g2685 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.2
Cre06g2555 . 42 869 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1091.6
Cre07g0616 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 78.2 0.0e+00 1380.2
Cre04g2005 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1322.4
Cre10g0401 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cre05g2685 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1091.6
Cre06g2555 . 39 871 Trehalose Biosynthesis Gene Families AT1G06410 59.5 2.9e-300 1028.1
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1192.9
Cre06g2555 . 38 906 Trehalose Biosynthesis Gene Families AT1G70290 62.0 0.0e+00 1088.9
Cre07g0616 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.7 1.1e-291 999.6
Cre04g2005 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.4e-290 994.6
Cre10g0401 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 3.3e-285 978.0
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.3
Cre06g2555 . 38 878 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1204.9
Cre10g0401 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1108.2
Cre07g0616 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1097.8
Cre04g2005 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1093.2
Cre05g2685 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.2
Cre06g2555 . 35 872 Trehalose Biosynthesis Gene Families AT1G60140 68.4 0.0e+00 1219.5
Cre10g0401 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.5
Cre07g0616 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.2 2.2e-313 1071.6
Cre04g2005 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 4.4e-312 1067.4
Cre05g2685 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.3 7.8e-309 1056.6
Cre06g2555 . 41 871 Trehalose Biosynthesis Gene Families AT2G18700 60.0 2.0e-301 1031.9
Cre04g2005 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.8e-298 1021.5
Cre10g0401 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.8e-298 1021.5
Cre07g0616 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 3.9e-292 1001.1
Cre09g2323 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.3 1.9e-195 679.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73