Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0618 ATGGACCGCCGTGTTCGTACAAACCCATTTGTCTCCGAGCAAGAAGATCCTGAAGCCACGTCGGACGACGGCTCACCGGAATCACCCTCCGACGGCAATGACTCAAAATCCGCCTCCGCCGGCCCACCTCCCAAAAAGAGTAGAAGGGGAGTGCAGAAGAGAGTGGTGTCCGTACCGATCGGTGACGTGGAAGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATCCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGCTCCAAGGGCTGCCCAGCAAGAAAGCAAGTAGAAAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAATCACCAACTCCCGGTCACCAAATCTCACCACCACCACCACAATTCCTCCCCATCCTCCGCCGCGATCGCCGCCGCATCCACCGCAGCCGACTCTTCGTCCCCGGGGAGCACTACGACGTCGTCCTCCACTTCCTCCGGCGATAACACGAACGCCGCTCCATCGTCGCCGGCAGCGGCGGCGAAGTTCGAGGAGGCGGCTGCGGTTTTCGCAAGTCAGCCGGAACTGGAACTCGGCGGCGACTCGCTGATGATAAAACCATGCATCGGCGATTTCGGATGGTTGGCTGACGTGGCGTACGACAGAATCCTGGAGGGCCCGATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCCACAACAGGTGATGACGAGGAGGAGTCGTTATTTGCGGATCTTGGGGAATTACCCGAAGGCTCTGTTGTTTTCGGCCGACGACGACCGGTCCAACCGGACGGACCAAACCGGACATGTGGCAGAGTTTTAGACTGCTAG 903 57.48 MDRRVRTNPFVSEQEDPEATSDDGSPESPSDGNDSKSASAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDPWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPVTKSHHHHHNSSPSSAAIAAASTAADSSSPGSTTTSSSTSSGDNTNAAPSSPAAAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWLADVAYDRILEGPICGGGDIFDDADVMVLSTTGDDEEESLFADLGELPEGSVVFGRRRPVQPDGPNRTCGRVLDC 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3968828 3971446 - CrPI670011_07g006180.1 Cre07g0618 503199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0618 300 SUPERFAMILY WRKY DNA-binding domain 71 136 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g0618 300 Pfam WRKY DNA -binding domain 77 134 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g0618 300 ProSiteProfiles WRKY domain profile. 76 136 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g0618 300 MobiDBLite consensus disorder prediction 147 187 - -
Cre07g0618 300 MobiDBLite consensus disorder prediction 23 37 - -
Cre07g0618 300 Gene3D WRKY domain 63 137 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g0618 300 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 24 200 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre07g0618 300 MobiDBLite consensus disorder prediction 137 189 - -
Cre07g0618 300 FunFam WRKY transcription factor 65 62 136 - -
Cre07g0618 300 SMART WRKY_cls 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g0618 300 MobiDBLite consensus disorder prediction 1 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0436 Cre-Chr7:2048638 Cre07g0618 Cre-Chr7:3968828 1.30E-22 dispersed
Cre07g0618 Cre-Chr7:3968828 Cre10g1308 Cre-Chr10:26373199 6.70E-26 dispersed
Cre03g0976 Cre-Chr3:8587834 Cre07g0618 Cre-Chr7:3968828 1.30E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53996 PF03106 WRKY 2.10E-24 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0618 - - - 0.0