Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0659 ATGCAGCTGAATGTGATAATGTTGGTGAATTTAGTAGTGATGGCCATGGGGAAGTTTCTTGTGGTTGAATCAGCTTGGCTTCCAAACCGTACGTCAGCTTCCCATTGGCTCCCCGCCACCGCCACCTGGTACGGCAGCCCTGAAGGCGACGGCAGCGACGGTGGGGCATGTGGCTACGGTAGTTTGGTGGACGTGAAGCCGTTCAAAGCGAGAGTAGGGGCCGTGAGTCCAATCCTATTCAAGGACGGGGAAGGGTGCGGCGCGTGCTACAAGGTCCGGTGCTTGGACCGAGCCATATGTGCCAAACGGGCTGTTACCATAATAGTGACCGACGAGTGTCCGGGTGGATACTGTGCCAGTGGCCGCACCCACTTCGACTTGAGTGGCGCCGCCTTCGGACGCATGGCAGTGGCAGGTGCGGGCAGCCGTCTTCGGGACCGAGGCGAATTGACCGTCATGTACAGACGGACACCGTGTAAATATCGAGGAAAGAATATAGCGTTTCATGTGAATGAAGGTTCTACAGATCATTGGCTTTCACTTTTGGTGGAGTTCGAGGATGGAGATGGTGATATTGGTTCTATGCAAATCAAACAAGCAAATTCAAATGAATGGATGGAAATGGCACATGTGTGGGGTGCAACATGGTGCATAAATGGAGGGCCTTTAGAGGGTCCATTTTCAGTGAAGTTAACAACATTATCCACAGCCAAAACTCTGTCAGCAAGAGATGTTATCCCAAGGAATTGGTCTCCAAAGGCAACTTACACTTCTCGTTTGAACTTCTCCTAA 792 51.64 MQLNVIMLVNLVVMAMGKFLVVESAWLPNRTSASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPILFKDGEGCGACYKVRCLDRAICAKRAVTIIVTDECPGGYCASGRTHFDLSGAAFGRMAVAGAGSRLRDRGELTVMYRRTPCKYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQANSNEWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSARDVIPRNWSPKATYTSRLNFS 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4323212 4326598 + CrPI670011_07g006590.1 Cre07g0659 503240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0659 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 258 IPR007117 -
Cre07g0659 263 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576(InterPro)
Cre07g0659 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576(InterPro)
Cre07g0659 263 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576(InterPro)
Cre07g0659 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
Cre07g0659 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
Cre07g0659 263 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cre07g0659 263 CDD DPBB_EXPB_N 36 159 - -
Cre07g0659 263 SMART dpbb_1 72 154 IPR007112 -
Cre07g0659 263 FunFam Expansin B3 23 160 - -
Cre07g0659 263 PANTHER EXPANSIN-B3 14 262 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Cre07g0659 263 SUPERFAMILY PHL pollen allergen 164 258 IPR036749 -
Cre07g0659 263 Gene3D - 161 263 IPR036749 -
Cre07g0659 263 FunFam Beta-expansin 3 161 263 - -
Cre07g0659 263 Pfam Expansin C-terminal domain 166 247 IPR007117 -
Cre07g0659 263 PRINTS Major pollen allergen Lol pI signature 74 85 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre07g0659 263 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre07g0659 263 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre07g0659 263 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre07g0659 263 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre07g0659 263 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre07g0659 263 Pfam Lytic transglycolase 74 141 IPR009009 -
Cre07g0659 263 Gene3D - 21 160 IPR036908 -
Cre07g0659 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 164 IPR007112 -
Cre07g0659 263 SUPERFAMILY Barwin-like endoglucanases 26 163 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0659 Cre-Chr7:4323212 Cre10g0873 Cre-Chr10:9921863 3.10E-27 dispersed
Cre05g0092 Cre-Chr5:1144138 Cre07g0659 Cre-Chr7:4323212 5.60E-64 transposed
Cre09g1204 Cre-Chr9:14270888 Cre07g0659 Cre-Chr7:4323212 5.90E-23 transposed
Cre02g2065 Cre-Chr2:34143883 Cre07g0659 Cre-Chr7:4323212 1.90E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0659 K20628 - csv:101205324 478.404