Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0679 ATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGTCGTCCTCGCCACACAGGGGTGATGGTTGGGATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGTATTGTTAGCAATTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAACTTCGTGTTGCTCCCGAGGAGCACCCGGTTCTCCTAACAGAGGCTCCTCTTAACCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACTTTCAATACTCCAGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAAGGGTATGCCCTCCCACACGCCATCCTTCGTCTCGACCTGGCAGGCCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACCACAACTGCTGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGGCATATATTGCCCTTGATTATGAACAGGAGATGGAAACATCCAAGACTAGCTCGTCCGTTGAAAAGAGCTACGAATTGCCTGACGGACAGGTGATCACCATCGGCGCAGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAGCCCTCCATGATCGGGATGGAAGCAGCAGGGATTCATGAGACTACATACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGACTTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAAATCTCCGCCCTTGCCCCAAGCAGCATGAAGATAAAGGTCGTGGCACCACCGGAGAGAAAGTACAGTGTCTGGATCGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAAGCAGAATACGACGAATCTGGACCGTCGATTGTGCACAGGAAATGCTTCTAA 1083 47.46 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4586163 4587680 - CrPI670011_07g006790.1 Cre07g0679 503260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0679 360 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Cre07g0679 360 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Cre07g0679 360 PANTHER ACTIN 4 352 IPR004000 GO:0005737(PANTHER)
Cre07g0679 360 SMART actin_3 1 360 IPR004000 -
Cre07g0679 360 FunFam Actin, muscle 165 256 - -
Cre07g0679 360 ProSitePatterns Actins signature 2. 341 349 IPR004001 -
Cre07g0679 360 FunFam Actin, alpha skeletal muscle 238 313 - -
Cre07g0679 360 FunFam Actin, alpha skeletal muscle 1 160 - -
Cre07g0679 360 PRINTS Actin signature 34 45 IPR004000 -
Cre07g0679 360 PRINTS Actin signature 100 113 IPR004000 -
Cre07g0679 360 PRINTS Actin signature 221 237 IPR004000 -
Cre07g0679 360 PRINTS Actin signature 11 20 IPR004000 -
Cre07g0679 360 PRINTS Actin signature 125 144 IPR004000 -
Cre07g0679 360 PRINTS Actin signature 46 68 IPR004000 -
Cre07g0679 360 Gene3D - 1 354 - -
Cre07g0679 360 Gene3D - 123 323 - -
Cre07g0679 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Cre07g0679 360 CDD NBD_sugar-kinase_HSP70_actin 59 166 - -
Cre07g0679 360 Gene3D Actin; Chain A, domain 4 165 256 - -
Cre07g0679 360 FunFam Actin, alpha skeletal muscle 314 360 - -
Cre07g0679 360 SUPERFAMILY Actin-like ATPase domain 132 360 IPR043129 -
Cre07g0679 360 Pfam Actin 1 360 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0679 Cre-Chr7:4586163 Cre10g1871 Cre-Chr10:33285010 6.10E-207 dispersed
Cre07g0679 Cre-Chr7:4586163 Cre01g0489 Cre-Chr1:4215697 6.10E-207 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0679 K10355 - csv:101220611 715.687