Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0681 ATGGTTTTTTCTTCTTCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTGACGAATCACCAAACGGGAGGAAATGATACTGCAGAGGATTCTGGTCAAGTTTTACTACCTCCACCACCTGGGGGTGGGGGAGGTAGTGACGGTGGTGGTGTTGGAGGTGGTACTGGGTCGATTAGGCCGGTTTCGATGACTGATCGAGCCCGGTTGGCGAAGATTCCGCAGCCGGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGCCACTTTTGTAAGACTTGTCGTCGGTATTGGACACGTGGTGGTGCACTGAGGAATGTTCCGGTCGGTGGTGGTTGCCGGAGGAACAAGAGGACCAAATCCCGGAATCGGTCTAAGTCTCCGGTGGCCAGTGAACGGCAATTATTAGGTGGATCAGCTAATTCTTCTGCTGGGGTTTCACTTTCAACACAACCCCATTTGCCCTTTTTGTCTTCTTTACATAATTTCTCTAATTATGGCCTCAATTTGGGCATAATTCCGCCGCAAGCTCCTCCATCAAGCGGTGGCTCCACCACCGGAGGAGTGGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACAACCACAACAATTCCCTCTCTTGGCTAATGATCAACAACCTAATTTGCTTTACACTTTCGAGCCACCGGAAGGCACCATGACTCGGTATAATCTTGGCGGGTTCTCTAGATTAGGGATTGAAAACGACATGGGAATGACGACGGAGGCCGGGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTAGGGAAGAATTTTCAATTTTGGGTCGGTGGTGGTGGCGGAAGCGACGTTAATGCATGGAGCGGCGGTGGCGGCGATCTTCATGGCTTCTCTTCATCCTCCGCCAGCCACTTATTGAGACA 965 49.43 MVFSSSLPSYLDPPNWQPLTNHQTGGNDTAEDSGQVLLPPPPGGGGGSDGGGVGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPVASERQLLGGSANSSAGVSLSTQPHLPFLSSLHNFSNYGLNLGIIPPQAPPSSGGSTTGGVDVHEFQGDHWRLQQPQQFPLLANDQQPNLLYTFEPPEGTMTRYNLGGFSRLGIENDMGMTTEAGAVKVEESKGMNLGKNFQFWVGGGGGSDVNAWSGGGGDLHGFSSSSASHLLR 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4608318 4609495 - CrPI670011_07g006810.1 Cre07g0681 503262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0681 321 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre07g0681 321 MobiDBLite consensus disorder prediction 1 31 - -
Cre07g0681 321 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre07g0681 321 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre07g0681 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 69 156 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g0681 321 MobiDBLite consensus disorder prediction 125 161 - -
Cre07g0681 321 MobiDBLite consensus disorder prediction 1 62 - -
Cre07g0681 321 MobiDBLite consensus disorder prediction 145 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0681 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0474 Cre-Chr3:3153121 Cre07g0681 Cre-Chr7:4608318 7.80E-42 dispersed
Cre04g1924 Cre-Chr4:36786582 Cre07g0681 Cre-Chr7:4608318 4.10E-26 dispersed
Cre04g1925 Cre-Chr4:36794076 Cre07g0681 Cre-Chr7:4608318 2.10E-30 dispersed
Cre07g0681 Cre-Chr7:4608318 Cre07g1719 Cre-Chr7:32642272 4.20E-26 dispersed
Cre10g0921 Cre-Chr10:11163289 Cre07g0681 Cre-Chr7:4608318 1.70E-28 transposed
Cre01g0476 Cre-Chr1:4125629 Cre07g0681 Cre-Chr7:4608318 7.70E-45 wgd
Cre10g2214 Cre-Chr10:36623748 Cre07g0681 Cre-Chr7:4608318 3.30E-45 wgd
Cre02g2330 Cre-Chr2:36784936 Cre07g0681 Cre-Chr7:4608318 4.00E-43 wgd
Cre04g0923 Cre-Chr4:27900575 Cre07g0681 Cre-Chr7:4608318 3.10E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g300 . . . . . . . . Cmo04g00221 Cmo04g01262 Cma04g01188 Cma04g00219 Car04g01092 . . . Cpe01g00186 . . . . . . . Cla07g00304 Cam07g0322 Cec07g0366 Cco07g0327 Clacu07g0315 Cmu07g0371 Cre07g0681 . . . . . . Chy10g00546 Cme10g00889 . . . . . . . . . . . . . . . Cpe01g01095 . . . . . . . . . . . . . . . Lsi04g00882 Csa05g00707 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre03g0949 . 17 178 C2C2-Dof Transcription Factor Family AT1G29160 57.4 8.5e-45 177.2
Cre04g1984 . 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.6 3.7e-40 161.8
Cre09g2346 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 4.6e-42 169.1
Cre03g0949 . 17 178 C2C2-Dof Transcription Factor Family AT2G34140 55.6 2.6e-43 172.2
Cre04g1984 . 6 159 C2C2-Dof Transcription Factor Family AT2G34140 50.3 5.7e-38 154.5
Cre10g2214 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.4e-40 164.1
Cre01g0476 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.2e-38 156.8
Cre07g0681 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 64.1 2.9e-38 156.4
Cre03g0474 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.5e-37 152.1
Cre09g2346 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 2.8e-44 176.4
Cre03g0474 . 60 141 C2C2-Dof Transcription Factor Family AT5G02460 86.6 1.2e-38 157.9
Cre01g0476 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 62.8 8.7e-37 151.8
Cre10g2214 . 54 136 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.1e-37 153.7
Cre03g0474 . 49 143 C2C2-Dof Transcription Factor Family AT3G55370 74.7 6.1e-37 152.1
Cre02g2330 . 57 205 C2C2-Dof Transcription Factor Family AT3G55370 54.0 8.0e-37 151.8
Cre04g0923 . 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.4e-36 151.0
Cre06g2403 . 28 325 C2C2-Dof Transcription Factor Family AT5G60850 53.8 2.1e-46 183.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54001 PF02701 zf-Dof 4.40E-32 No_clan Cre TF