Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0690 ATGGCCGCCCTTCCTCTTACTCTTCTCCCCATTATCCTTTCGCTTCTTGCGGTCGACGCTAGGATCCCTGGAGTTTACTCCGGCGGCCAGTGGCAGAGTGCTCATGCTACTTTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAACACGGCGGCGTTGAGTACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCGTGCTTCGAGCTTAAGTGCGCTAACGATCCACAGTGGTGCCATTCCGGCAGTCCGTCGATTTTCATCACGGCCACGAACTTTTGCCCTCCGAACTACGCTCTTCCAAGCGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCTGAGTACAGAGCCGGAATCGTTCCCGTCTCTTATCGCAGGGTGCCATGCCGCAAGCAAGGAGGAATAAGATTCACAATCAACGGTTTCCGCTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGGGACATCGTGAAGGCCAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTTGGTCAGTCACTTTCCTTTAGGGTCACAGCCAGTGACCGTCGCACCTCCACTTCCTGGAACATCGTCCCTTCCAATTGGCAATTTGGCCAGACTTTCACCGGCAAGAATTTCAGGGTCTAA 774 54.39 MAALPLTLLPIILSLLAVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4766594 4768650 - CrPI670011_07g006900.1 Cre07g0690 503271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0690 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Cre07g0690 257 Gene3D - 163 255 IPR036749 -
Cre07g0690 257 FunFam Expansin 163 255 - -
Cre07g0690 257 FunFam Expansin 20 159 - -
Cre07g0690 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Cre07g0690 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Cre07g0690 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Cre07g0690 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Cre07g0690 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Cre07g0690 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Cre07g0690 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Cre07g0690 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Cre07g0690 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Cre07g0690 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Cre07g0690 257 PANTHER EXPANSIN-A15 18 255 IPR002963 GO:0009664(InterPro)
Cre07g0690 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Cre07g0690 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Cre07g0690 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Cre07g0690 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Cre07g0690 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Cre07g0690 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Cre07g0690 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Cre07g0690 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Cre07g0690 257 Gene3D - 19 159 IPR036908 -
Cre07g0690 257 SMART dpbb_1 66 153 IPR007112 -
Cre07g0690 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Cre07g0690 257 CDD DPBB_EXPA_N 30 158 - -
Cre07g0690 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1043 Cre-Chr4:29056033 Cre07g0690 Cre-Chr7:4766594 2.60E-86 dispersed
Cre07g0690 Cre-Chr7:4766594 Cre07g0895 Cre-Chr7:7955803 1.20E-103 dispersed
Cre01g0497 Cre-Chr1:4275432 Cre07g0690 Cre-Chr7:4766594 5.00E-114 wgd
Cre02g2314 Cre-Chr2:36638863 Cre07g0690 Cre-Chr7:4766594 2.60E-135 wgd
Cre03g0457 Cre-Chr3:3010152 Cre07g0690 Cre-Chr7:4766594 2.90E-134 wgd
Cre04g0909 Cre-Chr4:27752284 Cre07g0690 Cre-Chr7:4766594 1.80E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0690 - - - 0.0