Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0702 ATGACAGGCCTTAACTCTTCTAATTTCTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTACATCTCCCCATGCATATCCGAAGCCATGCTGCCCTTACGGTCGCTTATGAAGCGCTCGAGCGCATGCGAGATCCTACCTATGGTTGCGTTGCGCATATTTTCGCATTGCAGCAAGAGGTTGCGAGCTTGCAAGAGGAGATAGAAATTCTGGGGAGCCAAATAGCAAACTTCACTGCTACCGGTGGGAGCGTTGCGGGGGTCGAGAATCCATTTATAGATCAACTTCAAGTTTCACAACAGCTGAAAGATTTTGAGATGATGAACAGAGATGATTACCAAAATGAGCTGCTTTCTGAGTTGCCCTACCAAAGTTTTGATAACGTCCAAAATGATAATAATGGTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGATTTTGGGTTTTGCAGCTCAAATGATGTTGTTGAGAGATCAGCCTGTGATGTTTCATTTGAGGAGAGTTTTGTTGGTTATCCATGGGTAGTTGGATGA 663 42.84 MTGLNSSNFSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFTATGGSVAGVENPFIDQLQVSQQLKDFEMMNRDDYQNELLSELPYQSFDNVQNDNNGQMISPLFCLGEEDGDFGFCSSNDVVERSACDVSFEESFVGYPWVVG 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4940955 4941893 + CrPI670011_07g007020.1 Cre07g0702 503283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0702 220 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Cre07g0702 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 143 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cre07g0702 220 Coils Coil 93 120 - -
Cre07g0702 220 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0702 Cre-Chr7:4940955 Cre09g0763 Cre-Chr9:7479801 2.30E-31 dispersed
Cre07g0702 Cre-Chr7:4940955 Cre06g0810 Cre-Chr6:1446945 3.40E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54002 PF03195 LOB 5.00E-33 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0702 K13945 - csv:101204875 370.548