Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0703 ATGGCGAACCGATGGTGGGCTGAAAATATACCCACCACCACGGACAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCTGCTGATGAAGAGAACAACTCGGGAAGCCATGAGAGAGCTGAACCAGGCACCAGTTCAAGCACGCGCCGCCCTCGTGGCCGGCCGCCGGGATCTAAGAACAAGCCGAAGCCACCGGTGGTTGTAACGAAGGAGAGCCCCGATGCCCTCCGGAGCCACGTTTTGGAAATAGGCAGCGGCAGTGACATCGTTGAAAGCATCTCGAACTTCGCCCAGCGCCGGCAGCGAGGAGTTTCAGTTCTTAGCGGAAATGGGGTTGTCGCCAATGTAACTCTCCGGCATCCGGCGGCCCCAGGCGGCGTTATTACACTACAAGGTCGATTTGATATACTGTCGCTCTCTGGTGCTTTTTTGCCTGCCCCAGCTCCGCCGGGTGCAACTGGGTTAACTGTCTACTTGGCTGGCGGACAGGGGCAGGTCGTTGGTGGCATTGTTGTCGGTGCACTCGTTGCAACCGGTCCAGTCATCGTCATCGCTGCCACTTTCACCAATGCAACATTCGAGCGGCTGCCGCTCGAGGACGAGGAGGTGGCCGCGGGAGACAAGTCTGGGACTAGCCAGAACAATTCAACTTCTCAGAGCATGGGGGAGCAACAGCAACAGCAACAGCAGCAACAACAGCAACAGCAGCCTTCAATGGGAGTTTACAATATGGGTCCAAACTTGGTGCCAAATGGTCAGTGGTGTAGGTGGAACAAGTGGAAGTATGAGTTTGGAGCCACAATATTCTTTGATCAGGTGGTTTGA 840 55.24 MANRWWAENIPTTTDSSTSNPYSTPLKQSLEAADEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEDEEVAAGDKSGTSQNNSTSQSMGEQQQQQQQQQQQQQPSMGVYNMGPNLVPNGQWCRWNKWKYEFGATIFFDQVV 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4944381 4947477 - CrPI670011_07g007030.1 Cre07g0703 503284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0703 279 CDD DUF296 82 165 IPR005175 -
Cre07g0703 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Cre07g0703 279 PIRSF ESCAROLA 7 272 IPR014476 GO:0003680(InterPro)
Cre07g0703 279 Gene3D - 81 210 - -
Cre07g0703 279 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Cre07g0703 279 MobiDBLite consensus disorder prediction 1 78 - -
Cre07g0703 279 MobiDBLite consensus disorder prediction 43 58 - -
Cre07g0703 279 MobiDBLite consensus disorder prediction 212 247 - -
Cre07g0703 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 258 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre07g0703 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Cre07g0703 279 FunFam AT-hook motif nuclear-localized protein 81 208 - -
Cre07g0703 279 MobiDBLite consensus disorder prediction 207 248 - -
Cre07g0703 279 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2008 Cre-Chr2:33535797 Cre07g0703 Cre-Chr7:4944381 1.20E-70 dispersed
Cre05g0548 Cre-Chr5:4844801 Cre07g0703 Cre-Chr7:4944381 3.40E-64 dispersed
Cre07g0703 Cre-Chr7:4944381 Cre09g2174 Cre-Chr9:40811400 4.80E-58 dispersed
Cre03g1491 Cre-Chr3:29224614 Cre07g0703 Cre-Chr7:4944381 4.50E-37 transposed
Cre11g1150 Cre-Chr11:9130236 Cre07g0703 Cre-Chr7:4944381 1.80E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0703 - - - 0.0