Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0756 ATGGAAGGGAAGGAAGAAGATGTAAGACTTGGAGCTAACAAGTTCACCGAGAGACAGCCGATTGGAACGGCGGCGCAGAGTCAAGATGACGGCAAGGACTACAAGGAGCCACCGCCGGCGCCGTTGTTCGAGCCGGAGGAGCTCACTTCGTGGTCCTTTTACAGAGCTGGAATTGCAGAGTTTTTCGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCGTCCGGTCCAACGAAGCCAACGGCAACACCTGTAAGACCGTCGGGATTCAGGGGATTGCTTGGGCTTTCGGCGGTATGATTTTCGCTCTGGTTTACTGTACTGCTGGAATTTCCGGTGGACACATTAACCCGGCGGTGACTTTCGGGCTGTTTTTGGCGAGAAAGTTGTCGTTGACCAGGGCGATTTTCTACATAGTGATGCAGTGCCTTGGTGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAACCCAAGCCCTACGACAGGCTCGGTGGTGGAGCTAACGTTGTGAACAGTGGATACACCAAAGGAGATGGGCTAGGCGCTGAGATCGTCGGCACATTCATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCCAAACGTAGCGCCAGAGACTCACATGTTCCGATTTTGGCACCGTTGCCAATTGGGTTTGCAGTGTTCTTAGTTCACTTGGCCACCATTCCGATCACCGGCACCGGCATCAACCCAGCCCGGAGCTTGGGAGCTGCCATTATTTTCAACCACGACAAAGCCTGGGATCATCACTGGATTTTCTGGGTGGGACCATTCATCGGCGCTGCTCTTGCAGCTCTTTACCACCAAGTTGTGATCAGAGCCATCCCTTTCAAGTCCAACCGCCGCCGCCGCCGCCACTGCCGTCGTTTAGCCGCCGCCGCTAGTGCCACCATTGCTGCCGCCGCCGCCGCCAGTGCCACCGCTGCTGCCGCCGCCGCCGCCGCCATATACTTGTAA 993 56.5 MEGKEEDVRLGANKFTERQPIGTAAQSQDDGKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLGGGANVVNSGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNHDKAWDHHWIFWVGPFIGAALAALYHQVVIRAIPFKSNRRRRRHCRRLAAAASATIAAAAAASATAAAAAAAAIYL 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5736009 5739183 - CrPI670011_07g007560.1 Cre07g0756 503337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0756 330 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 291 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cre07g0756 330 CDD MIP 55 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre07g0756 330 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre07g0756 330 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre07g0756 330 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre07g0756 330 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre07g0756 330 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre07g0756 330 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre07g0756 330 NCBIfam MIP family channel protein 59 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre07g0756 330 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cre07g0756 330 Gene3D Glycerol uptake facilitator protein. 40 298 IPR023271 -
Cre07g0756 330 FunFam Probable aquaporin PIP1-2 40 298 - -
Cre07g0756 330 MobiDBLite consensus disorder prediction 1 39 - -
Cre07g0756 330 SUPERFAMILY Aquaporin-like 46 285 IPR023271 -
Cre07g0756 330 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2278 Cre-Chr5:34358408 Cre07g0756 Cre-Chr7:5736009 2.30E-108 dispersed
Cre07g0756 Cre-Chr7:5736009 Cre07g0758 Cre-Chr7:5749591 2.60E-164 dispersed
Cre07g0756 Cre-Chr7:5736009 Cre07g0757 Cre-Chr7:5744121 5.30E-165 tandem
Cre02g1454 Cre-Chr2:26351832 Cre07g0756 Cre-Chr7:5736009 6.10E-17 transposed
Cre09g2261 Cre-Chr9:41798059 Cre07g0756 Cre-Chr7:5736009 3.30E-139 transposed
Cre10g2298 Cre-Chr10:37239567 Cre07g0756 Cre-Chr7:5736009 5.10E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0756 K09872 - csv:101215145 563.533