Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0761 ATGTCCATTGTTGTCTGTACCAAATCAAGCATTTCAGATTGGAAGGTACTTCGATTTCGCTTGCTTCTTCTTGAAGCGTTGCTTGGTTTGACACACCTAATGGTAGGCGTCTTTGGTAAATTGTCATCCATGTCATCAATTGTTGATATGCTACCAGTCGGTCGATTTTCTGGCAGCTACGTCTACTCAACGAACGATAATCAATTTCAATCCAATGCCTTGATTTTTCACTACCACCGCCAACGGCAAATGGCTTCCGTATATCGTGATCGGACGTCGGAATTTCGGTCACTGTCGGAGACGCTGAAGAAGATCGGTGGAGCCACAGCTGCCGTCAATCCAGCTCAAAATGAACCATCGGCGTCCACGCCATCCGGATCACCGGCCTTTGTACGATCAGAATTCAGCAAAAAGGCGTCGCGCATCGGATTGGGTATCCAAGAAACCTCTCAGAAGATCGTGAGGCTCGCTCAGTTGGCGAAAAAATCATCAATGTTTGATGACCCAATGAGGGAAATACAGGAAATGACTGCTTTGATTAAAAATGATATTACATCCTTGAATGTAGCGATCACAGACTTGCAAACCATCCATAACATGGAGACAACAGAGGGGAATTATTCAGAGGATAGAGTGGTTCATTCAACAGCTGTCTGTGATGACTTGAAGAGCAGACTTATGGGAGCTACAAAACAGCTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGCAAATATTTTCTGCAAATGCATCCAGAGAAAGTCCTTTCCAGAATCAACCCAAAACTGTAACACAACCTCCACCTTGGTCAAAAAATACATCTGGAAGTGCCCAATCACCCTTGTTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACATGAACACCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCGCTCCATAATGTGGAATCCACCATATCAGAACTCAGTGGAATTTTTACACATCTTGCCACTATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGATGAATCGTTGGCAAACGTAGATGGTGCTCGGAGTGCTCTTTTAAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTATAAAAATATTTGCCATTTTAATAATTTTCTTGATGGTCTTTATATTCTTGGCGTAA 1266 43.29 MSIVVCTKSSISDWKVLRFRLLLLEALLGLTHLMVGVFGKLSSMSSIVDMLPVGRFSGSYVYSTNDNQFQSNALIFHYHRQRQMASVYRDRTSEFRSLSETLKKIGGATAAVNPAQNEPSASTPSGSPAFVRSEFSKKASRIGLGIQETSQKIVRLAQLAKKSSMFDDPMREIQEMTALIKNDITSLNVAITDLQTIHNMETTEGNYSEDRVVHSTAVCDDLKSRLMGATKQLQDVLTTRTENIKANESRRQIFSANASRESPFQNQPKTVTQPPPWSKNTSGSAQSPLLSSNGAQVGGQLRRRLAVENMNTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVDGARSALLRHLNQISSNRWLLIKIFAILIIFLMVFIFLA 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5780108 5784781 + CrPI670011_07g007610.1 Cre07g0761 503342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0761 421 PANTHER SYNTAXIN 142 412 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cre07g0761 421 MobiDBLite consensus disorder prediction 113 130 - -
Cre07g0761 421 MobiDBLite consensus disorder prediction 256 298 - -
Cre07g0761 421 MobiDBLite consensus disorder prediction 110 130 - -
Cre07g0761 421 SUPERFAMILY t-snare proteins 131 385 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre07g0761 421 ProSitePatterns Syntaxin / epimorphin family signature. 336 375 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cre07g0761 421 Gene3D - 131 385 - -
Cre07g0761 421 Pfam SNARE domain 367 418 IPR000727 -
Cre07g0761 421 CDD SNARE_syntaxin5 333 418 - -
Cre07g0761 421 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 330 392 IPR000727 -
Cre07g0761 421 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 89 104 IPR021538 -
Cre07g0761 421 SMART tSNARE_6 325 392 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0761 Cre-Chr7:5780108 Cre08g1226 Cre-Chr8:25485306 1.40E-66 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0761 K08490 - csv:101213786 582.793