Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0774 ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAACCCGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGGTCCGTTTTACCTGAGTTTGATCTCTTATTCTGTTGTGGTATACTGTCAGTTGGGAAAGTGGAAAAGGTCATGTTCTTCTTGTCATTGTGA 441 48.53 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERSVLPEFDLLFCCGILSVGKVEKVMFFLSL 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6112809 6113860 + CrPI670011_07g007740.1 Cre07g0774 503355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0774 146 PANTHER CPG BINDING PROTEIN 7 120 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cre07g0774 146 Pfam Alfin 10 120 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0774 K26274 - - csv:101211934 245.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0774 Cre-Chr7:6112809 Cre11g0655 Cre-Chr11:3648964 2.60E-47 dispersed
Cre10g2315 Cre-Chr10:37383209 Cre07g0774 Cre-Chr7:6112809 2.60E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g0950 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 2.1e-113 405.6
Cre11g0655 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.7 2.9e-94 342.0
Cre09g0076 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 3.5e-92 335.1
Cre10g2315 . 1 238 Alfin-like Transcription Factor Family AT1G14510 59.3 5.8e-79 291.2
Cre08g0932 . 9 215 Alfin-like Transcription Factor Family AT1G14510 69.6 6.0e-76 281.2
Cre07g0774 . 8 120 Alfin-like Transcription Factor Family AT1G14510 69.6 7.9e-44 174.5
Cre11g0655 . 1 250 Alfin-like Transcription Factor Family AT5G26210 76.0 9.0e-112 400.2
Cre09g0076 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 4.3e-98 354.8
Cre10g0950 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 6.4e-94 340.9
Cre08g0932 . 1 215 Alfin-like Transcription Factor Family AT5G26210 71.0 7.1e-85 310.8
Cre10g2315 . 1 240 Alfin-like Transcription Factor Family AT5G26210 57.1 9.0e-80 293.9
Cre07g0774 . 7 111 Alfin-like Transcription Factor Family AT5G26210 74.3 7.2e-45 177.9
Cre11g0655 . 1 250 Alfin-like Transcription Factor Family AT3G42790 70.1 5.3e-101 364.4
Cre09g0076 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 3.0e-96 348.6
Cre10g0950 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 8.5e-91 330.5
Cre10g2315 . 9 240 Alfin-like Transcription Factor Family AT3G42790 58.3 9.8e-79 290.4
Cre08g0932 . 1 215 Alfin-like Transcription Factor Family AT3G42790 66.4 3.5e-76 282.0
Cre07g0774 . 7 111 Alfin-like Transcription Factor Family AT3G42790 73.3 5.1e-43 171.8
Cre10g2315 . 6 241 Alfin-like Transcription Factor Family AT5G05610 75.5 4.5e-105 377.9
Cre11g0655 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.7e-92 334.3
Cre09g0076 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.9 1.1e-90 330.1
Cre10g0950 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.3e-83 306.6
Cre08g0932 . 8 215 Alfin-like Transcription Factor Family AT5G05610 64.9 1.3e-72 270.0
Cre07g0774 . 1 120 Alfin-like Transcription Factor Family AT5G05610 78.3 1.2e-52 203.8
Cre07g0775 . 10 132 Alfin-like Transcription Factor Family AT5G05610 75.8 2.6e-52 202.6
Cre10g2315 . 44 241 Alfin-like Transcription Factor Family AT3G11200 76.2 2.7e-86 315.5
Cre09g0076 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 5.2e-74 274.6
Cre11g0655 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.3 1.5e-73 273.1
Cre10g0950 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.9e-69 258.8
Cre08g0932 . 44 215 Alfin-like Transcription Factor Family AT3G11200 64.0 4.9e-56 214.9
Cre07g0775 . 10 132 Alfin-like Transcription Factor Family AT3G11200 73.0 5.2e-50 194.9
Cre07g0774 . 43 120 Alfin-like Transcription Factor Family AT3G11200 89.7 6.0e-38 154.8
Cre10g0950 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.6e-76 283.1
Cre11g0655 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 7.4e-66 247.7
Cre08g0932 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.8e-65 245.0
Cre09g0076 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.5e-63 238.8
Cre10g2315 . 1 156 Alfin-like Transcription Factor Family AT2G02470 65.4 5.0e-54 208.4
Cre07g0774 . 8 120 Alfin-like Transcription Factor Family AT2G02470 70.4 1.8e-43 173.3
Cre08g0932 . 1 167 Alfin-like Transcription Factor Family AT5G20510 77.4 2.7e-73 271.9
Cre11g0655 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 7.5e-71 263.8
Cre09g0076 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 3.5e-68 255.0
Cre10g0950 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 8.6e-67 250.4
Cre10g2315 . 8 158 Alfin-like Transcription Factor Family AT5G20510 61.8 3.9e-51 198.4
Cre07g0774 . 7 111 Alfin-like Transcription Factor Family AT5G20510 72.4 2.3e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81