Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0775 ATGAAGCTTATTGCAAGGATTCGTTGGAAGCGCCTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAATCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCAATTCGAAACAGCAATCCGAAGCTACTCGAAGAGAGTTATGGAGAGGACGAAGATGAGCACGGTGATACGCTCTGTGGGAGCTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGGAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGGGGAAGACCGTAG 402 45.27 MKLIARIRWKRLFSMINDLPTLFEVASGRKSVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6122920 6125623 + CrPI670011_07g007750.1 Cre07g0775 503356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0775 133 MobiDBLite consensus disorder prediction 29 76 - -
Cre07g0775 133 CDD PHD_AL_plant 79 129 IPR044104 -
Cre07g0775 133 MobiDBLite consensus disorder prediction 41 62 - -
Cre07g0775 133 FunFam PHD finger alfin-like protein 72 128 - -
Cre07g0775 133 Pfam PHD-finger 80 126 IPR019787 -
Cre07g0775 133 ProSitePatterns Zinc finger PHD-type signature. 80 126 IPR019786 -
Cre07g0775 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 128 IPR013083 -
Cre07g0775 133 SUPERFAMILY FYVE/PHD zinc finger 68 131 IPR011011 -
Cre07g0775 133 SMART PHD_3 79 127 IPR001965 -
Cre07g0775 133 ProSiteProfiles Zinc finger PHD-type profile. 77 129 IPR019787 -
Cre07g0775 133 PANTHER CPG BINDING PROTEIN 8 132 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0775 Cre-Chr7:6122920 Cre09g0076 Cre-Chr9:1041870 2.80E-40 dispersed
Cre07g0775 Cre-Chr7:6122920 Cre10g2315 Cre-Chr10:37383209 9.60E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54006 PF00628 PHD 2.10E-11 CL0390 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0775 K26274 - csv:101211934 258.455