Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0777 CATCTCAATTTCACCCTCCAATCGAGGCCTTCTCGATTTCTCTCTGTTGGCTACCAGTTTCTTCAATCATTGAACCTCTTTCTTCTTTCAATTTACTTACAGGAACTGGATATGTGCAGTGGCTCTAAGAATAAAGTTGCTTCCTCAAATTCCGCCATGGAAGCTAGGTTTCTGAAGCTTAGCGAGGGGGCTTTGTTCTCCGCGAATTCAATCTTGCTTGAACTATCAGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGATTTGGATGTTGATGAGCCGAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCATTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGTACTTAATTGAGACGGGCAAAGTTGATGTCAACAGGGCTTGTGGTTCAGATTTGACCACTGCCCTTCACTGTGCCACTGCTGGTGGCTCTTGTTCTTCCCTTGAGACCATCAAGCTCTTGCTAGATGGATCTGCTGACGTCGATTGTGTCGATGCCTATGGGAGAAAACCTGTCGATTTGATTGTTTCAGCTTGCAGGATTGTGCTCAATTCGGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTGATCTGAGTCTTTACCTTGGAGAAGACCAGCAGAAGATCACAGCTTCCCAATCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCAGTTGATGTATCACTGCCCGACATCAACAGCGGGATATACGGTACCGATGATTTCAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCACACGATTGGACCGAGTGCCCTTTTGTTCATCCTGGCGAGAACGCTAGGCGTAGAGACCCCAGGAAGTACCCGTATAGTTGCGTCCCGTGCCCTGAATTCCGGAAGGGGGCTTGCCCAAAGGGAGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGTAAGGATGAGACTGGCTGCACAAGAAAAGTCTGCTTCTTTGCTCACAAACCTGATGAGTTGCGCCCTGTTTATGCATCAACAGGCTCAGGCATGCCCTCACCTAGGTCTCTTTCGAGCAGTGCCGCAGATATGTCTACCATGAGCCCGCTTGCTCTTGGTTCATCATCGTTGTCCTTGCCGACTACCTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCGAAAAATGGGAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAGCTCCCTGGTAGCCGCTTAAAGGCCACCTTGAGCGCAAGAGATTTGGATTTGGAGATGGAATTGCTCGGGTTAGAAAAGAACGCGAGCCAATTACAACATCAACAACAGTTGATCGACGAGATAGCCCGGCTCTCCTCTCCTTCTTACTGGAGTGCAGATGTAAGCAGGAGTGCAGAGTTGAAGCCAGCAAACCTCGATGACATGTTTGGATCATTAGATTCTTCCTTATTGTCTCAGTTGCAAGGCACCTCGCTAAAGACGCCAATCTCAGCTCAAGTTCAATCTCCAACTGGGCTGCAGATGCGCCAAAACATCAACCAACTCCGTGCAAGTTACCCAGCTAACCTATCTTCCTCACCTGTAAAGAAATCCACTTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCAGTTATGAACTCAAGGTCTGCTGCCTTTGCTAAACGAAGCCAGAGTTTCGTCGATCGAGCTGCAGTGACTCGTCTTCCTGGGTTTACCGGAGCTGCAAATTCTGCAGCTACAATGTCTTCCCATCTCTCTGATTGGAACTCGCCTGATGGAAAACTAGACTGGGGAGTGCATGGCAACGATCTCAACAAACTCAAGAAATCTGCTTCGTTTGGGATCCGAAACAACGGCATCGGAACTCCCACATTTGCTCCACCAGTAGAGGAGCCTGATGTCTCTTGGGTCAACTCCTTGGTCAAAGACGTTCCATCGGAAAGCTTCGGGCTGTTCGGTGCCGAGAAGCGTCCATACAGCCTCAAAAGAGAAATCAACGAGATGCTCCCGTCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2172 48.62 HLNFTLQSRPSRFLSVGYQFLQSLNLFLLSIYLQELDMCSGSKNKVASSNSAMEARFLKLSEGALFSANSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDLTTALHCATAGGSCSSLETIKLLLDGSADVDCVDAYGRKPVDLIVSACRIVLNSGRKAMEMLLRGDGMAGEGDLSLYLGEDQQKITASQSAKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGLEKNASQLQHQQQLIDEIARLSSPSYWSADVSRSAELKPANLDDMFGSLDSSLLSQLQGTSLKTPISAQVQSPTGLQMRQNINQLRASYPANLSSSPVKKSTSFGFDSSSAVAAAVMNSRSAAFAKRSQSFVDRAAVTRLPGFTGAANSAATMSSHLSDWNSPDGKLDWGVHGNDLNKLKKSASFGIRNNGIGTPTFAPPVEEPDVSWVNSLVKDVPSESFGLFGAEKRPYSLKREINEMLPSWMEQQLYAEQEQIVA 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6353613 6356128 + CrPI670011_07g007770.1 Cre07g0777 503358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0777 723 Gene3D - 308 370 - -
Cre07g0777 723 ProSiteProfiles Ankyrin repeat region circular profile. 114 138 - -
Cre07g0777 723 Gene3D - 67 209 IPR036770 -
Cre07g0777 723 ProSiteProfiles Zinc finger C3H1-type profile. 307 334 IPR000571 GO:0046872(InterPro)
Cre07g0777 723 ProSiteProfiles Ankyrin repeat profile. 149 184 IPR002110 GO:0005515(InterPro)
Cre07g0777 723 FunFam Zinc finger CCCH domain-containing protein 66 265 333 - -
Cre07g0777 723 ProSiteProfiles Ankyrin repeat profile. 114 138 IPR002110 GO:0005515(InterPro)
Cre07g0777 723 MobiDBLite consensus disorder prediction 371 422 - -
Cre07g0777 723 SMART ANK_2a 149 181 IPR002110 GO:0005515(InterPro)
Cre07g0777 723 SMART ANK_2a 114 144 IPR002110 GO:0005515(InterPro)
Cre07g0777 723 SUPERFAMILY Ankyrin repeat 105 195 IPR036770 -
Cre07g0777 723 SMART c3hfinal6 342 365 IPR000571 GO:0046872(InterPro)
Cre07g0777 723 SMART c3hfinal6 307 333 IPR000571 GO:0046872(InterPro)
Cre07g0777 723 Pfam Ankyrin repeats (3 copies) 114 181 IPR002110 GO:0005515(InterPro)
Cre07g0777 723 MobiDBLite consensus disorder prediction 377 422 - -
Cre07g0777 723 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 332 IPR000571 GO:0046872(InterPro)
Cre07g0777 723 PANTHER UNKEMPT FAMILY MEMBER 109 680 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0777 Cre-Chr7:6353613 Cre10g1386 Cre-Chr10:27549866 1.70E-120 dispersed
Cre10g1828 Cre-Chr10:32838409 Cre07g0777 Cre-Chr7:6353613 4.00E-134 transposed
Cre02g2259 Cre-Chr2:36180932 Cre07g0777 Cre-Chr7:6353613 9.30E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54007 PF12796 Ank_2 2.50E-09 CL0465 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0777 - - - 0.0