Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0805 ATGGGTGGCAATTCACCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGTGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGTTTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAACTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACAACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCCTCCTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCCCTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA 501 47.7 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDNPVFPNCPQIHSDDKPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6832827 6833806 + CrPI670011_07g008050.1 Cre07g0805 503386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0805 166 Coils Coil 85 105 - -
Cre07g0805 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cre07g0805 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 115 - -
Cre07g0805 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2163 Cre-Chr2:35235154 Cre07g0805 Cre-Chr7:6832827 2.90E-45 dispersed
Cre03g0548 Cre-Chr3:4224671 Cre07g0805 Cre-Chr7:6832827 3.20E-36 dispersed
Cre03g0550 Cre-Chr3:4254034 Cre07g0805 Cre-Chr7:6832827 9.80E-37 dispersed
Cre07g0805 Cre-Chr7:6832827 Cre09g1636 Cre-Chr9:33675716 4.00E-44 dispersed
Cre04g2098 Cre-Chr4:38216030 Cre07g0805 Cre-Chr7:6832827 4.80E-31 transposed
Cre05g0966 Cre-Chr5:8888631 Cre07g0805 Cre-Chr7:6832827 2.60E-31 transposed
Cre02g2240 Cre-Chr2:36019568 Cre07g0805 Cre-Chr7:6832827 1.40E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54009 PF03195 LOB 3.70E-42 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0805 - - - 0.0