Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0859 ATGGATGAAACTCAAACCCCATTTCATTTTACCTCTTTTTGGAGATACCCATTTGGGGATTCTGGGGTTTTCTTCACTCACTCTCCTGATGGGCTCTGTTTTTCACATAAGAAGAAGGGGAAATGGAAGGTTCTGAGGAAAAACCCTAATGGGTTTGTTTCTGGTGGATTGGGTTTGTGGTTTTTGTTGCTTAATTTGATTTTTATTCCACCTGTTTTTAGCCAGGATTGGGATGGTGTGGTTGTAACTCAGGCTGATTTTCAATCCCTTCAGGCATTTAAGCAAGAGCTTGATGACCCTAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGCTGGGATTAAATGTGCTAAAGGACAGGTTATTGTAATACAGCTTCCTTGGAAGGGATTAGGAGGTAGAATCACTGAGAAGATTGGCCAACTTCAGGCACTTAGGAAGCTCAGTTTACATGACAACTTCATTGGTGGATCAATCCCTTCTTCATTGGGGCTTCTTCCAAATCTTAGAGGGGTTCAGTTGTTCAATAATCGATTTTCTGGTTCGATCCCGGCTTCATTGGGACTTTGTCCTTTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACTGGAACAATCCCACCTACTTTGGCAAACTCCACCAAGCTTTATTGGCTTAACTTGAGCTTTAACTCGTTTTCGGGTCCGATTCCATCGAGTCTTGCTCGCTCGGTGTCCCTTACTTTCCTTGCTCTTCAACATAACAATCTCTCAGGCAGCATTCCCGACTCTTGGGGGGGCGATGTCACCGAGCGAAACCGGGTGTTTCAGCTCAAGTCTCTGACTCTTGATGGCAATCTCCTCTCAGGTACCATACCAATTTCTTTAAGCAAGTTAAGTGAGCTTCAAGTGGTTTCCCTTAGCCACAATAGGTTAAATGGTGGCATTCCAGAAGAAATTAGTAAGCTTTCTCTGCTGAAAACTCTGGATGTTTCTAATAATTTCCTTAATGGAAGTTTGCCCCAAAGTTTTGATAAATTGAGAAAACTCTCTAATCTCAACTTGAGTAGAAACAGACTCAATGGTCAAATTCCTGCAACTTTAGGGAACATTTCAACTCTTACACAACTTGATTTATCTAAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGATTTGCAAGGTCTTCAATCCTTAAATGTCTCATACAACGACCTTTCGGGTTCAGTTCCTCCCGCTCTCGCTGAAAAATTTGCTGCAAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTTCGATTCGGTGCCCGTCCCCGGCCCCTTCTGAAGAAGCTCCTGCTCCTCCACCAGAAAGTATGACAACCCGCCATCGGAAGTTAAGTACTAAAGATATAATCCTCATAGCAGCAGGAGCCCTCCTTGTAGTATTGGTTATAGTTTTCTTTGTATTGCTCTGCTGCTTGATTAGGAAAAGGGCTGCTACAAAAGGAAAGGATGGTGGTGAGGCTGCAGCAGCTGGGGGTGCTAGGGTCGAGAAGGGTGTCCCTCCGACTAGCAGTGAAGTTGAAGCAGGAGCAGGGGATGCTGGTGGAAAGCTCGTCCATTTCGACGGGCAAACAGTCTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTGAAGAGATTGAGAGAGAAAATCACTAAGAGCCAAAAGGAATTTGAAGCAGAGGTTAACATACTTGGTAAGATCAGGCATCCAAATTTACTAGCCTTGAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTTTTCGATTACATGCCGAATGGGAGTCTTGCAGCGTTCCTGCATGCTCGTGGACCAGACACATCCATTGATTGGCCGACAAGGATGAAGATAGCTCAGGGTATGACGCGTGGCCTGTGCCACCTTCACACGCACGAGAACAGTATCCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACATTAATGCTAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACTGCAGCTGCAAGCTCAAATGTGATAGCAACAGCAGGGGCACTGGGGTACCGAGCACCAGAGCTCTCAAAGCTGAAAAAAGCAAACACGAAAACCGACATTTACAGCCTTGGAGTAATCATACTGGAACTCTTGACTGGTAAATCCCCTGGTGAAGCCATGAACGGAGTCGACTTGCCACAATGGGTTGCATCGATCGTCAAAGAGGAGTGGACTAATGAAGTTTTTGATTTGGAGCTGATGAGGGATGCATCTACAATTGGCGATGAGTTACTAAACACTCTGAAACTCGCTTTGCATTGTGTCGACCCTTCACCATCAGCGAGACCGGAAGTTCAACAAGTTTTGCAACAACTAGAGGAGATTAGGCCAGAAACTGCTCCAAGTTCTGGGGATGATGGAGCAGGAGGAGGAGGAGCCCCTTCAACAAGTGAGTGA 2550 44.86 MDETQTPFHFTSFWRYPFGDSGVFFTHSPDGLCFSHKKKGKWKVLRKNPNGFVSGGLGLWFLLLNLIFIPPVFSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWAGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGLCPLLQTLHISNNLLTGTIPPTLANSTKLYWLNLSFNSFSGPIPSSLARSVSLTFLALQHNNLSGSIPDSWGGDVTERNRVFQLKSLTLDGNLLSGTIPISLSKLSELQVVSLSHNRLNGGIPEEISKLSLLKTLDVSNNFLNGSLPQSFDKLRKLSNLNLSRNRLNGQIPATLGNISTLTQLDLSKNNLSGEIPASLADLQGLQSLNVSYNDLSGSVPPALAEKFAASSFVGNIQLCGFSGSIRCPSPAPSEEAPAPPPESMTTRHRKLSTKDIILIAAGALLVVLVIVFFVLLCCLIRKRAATKGKDGGEAAAAGGARVEKGVPPTSSEVEAGAGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHTHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGGGGAPSTSE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7200814 7203465 - CrPI670011_07g008590.1 Cre07g0859 503440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0859 849 SUPERFAMILY Protein kinase-like (PK-like) 559 827 IPR011009 -
Cre07g0859 849 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 83 265 - -
Cre07g0859 849 Pfam Protein tyrosine and serine/threonine kinase 558 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g0859 849 SMART LRR_typ_2 150 174 IPR003591 -
Cre07g0859 849 SMART LRR_typ_2 397 421 IPR003591 -
Cre07g0859 849 SMART LRR_typ_2 325 348 IPR003591 -
Cre07g0859 849 SMART LRR_typ_2 349 373 IPR003591 -
Cre07g0859 849 SMART LRR_typ_2 301 324 IPR003591 -
Cre07g0859 849 ProSiteProfiles Protein kinase domain profile. 555 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g0859 849 Gene3D Phosphorylase Kinase; domain 1 561 632 - -
Cre07g0859 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 70 837 IPR052451 -
Cre07g0859 849 CDD STKc_IRAK 561 826 - -
Cre07g0859 849 MobiDBLite consensus disorder prediction 505 531 - -
Cre07g0859 849 SUPERFAMILY L domain-like 123 418 - -
Cre07g0859 849 Gene3D Ribonuclease Inhibitor 233 335 IPR032675 -
Cre07g0859 849 Gene3D Ribonuclease Inhibitor 82 232 IPR032675 -
Cre07g0859 849 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 268 446 - -
Cre07g0859 849 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Cre07g0859 849 FunFam Leucine-rich repeat receptor-like protein kinase 540 631 - -
Cre07g0859 849 Gene3D Transferase(Phosphotransferase) domain 1 633 836 - -
Cre07g0859 849 Pfam Leucine Rich Repeat 225 244 IPR001611 GO:0005515(InterPro)
Cre07g0859 849 Pfam Leucine Rich Repeat 248 268 IPR001611 GO:0005515(InterPro)
Cre07g0859 849 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515(InterPro)
Cre07g0859 849 Pfam Leucine Rich Repeat 153 172 IPR001611 GO:0005515(InterPro)
Cre07g0859 849 MobiDBLite consensus disorder prediction 825 849 - -
Cre07g0859 849 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515(InterPro)
Cre07g0859 849 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515(InterPro)
Cre07g0859 849 FunFam Pollen receptor-like kinase 1 632 836 - -
Cre07g0859 849 Gene3D Ribonuclease Inhibitor 336 436 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0859 Cre-Chr7:7200814 Cre11g0754 Cre-Chr11:4739809 1.30E-69 dispersed
Cre09g2059 Cre-Chr9:39651786 Cre07g0859 Cre-Chr7:7200814 2.10E-41 dispersed
Cre07g0859 Cre-Chr7:7200814 Cre10g2345 Cre-Chr10:37620307 1.50E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64258 PF07714 PK_Tyr_Ser-Thr 1.50E-40 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0859 - - - 0.0