Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0876 ATGGGAGCTTCTAGCCTCCCTTGTTTTTCATCGCTATTTGCAGTTTTTCCACTTCAAAATAATGCTCACAACAAATCTTTACCATTTTCTTCAAATCTTTCAAAACCCCTTTTCCGATTGAACAGGATTTGCTGCGGAGTCCCTGAGAGTGGAATTCAGCAAAACCCCTCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAAGAGTACAATTTGGCTATGAAGAAGATGATGAGGAACCCCTATGAATATCACCATGAACTGGGCATGAACTATACTGTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCCGAAGATATCAATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTAAATTTACAGCAGGACAAGGATGTCGAGTACTGGGGAATCGACTTACGATCAATTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCAGCAAAAGATTTTGATCCAGATTCCCTGAGAAATGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCGATCTCAGAGGGTAAAGGAAAAGTGTACGTGCATTGCACCGCTGGACTGGGAAGGGCCCCCGCCGTCGCAATAGCTTACCTGTACTGGTTTTGCAGAATGAATTTAAATACAGCATATGAAGCACTGACCTCTAAAAGACCTTGTGGACCAAATAAAAGAGCGATCCGCGGAGCCACATACGATCTATCTAAAAATGACCCATGGAAGGAGCCATTTGAGAAACTTGAGTTCATTGTCATTCCATTTTTACTAGGATGA 801 42.32 MGASSLPCFSSLFAVFPLQNNAHNKSLPFSSNLSKPLFRLNRICCGVPESGIQQNPSTSRPSSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLRSIIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCRMNLNTAYEALTSKRPCGPNKRAIRGATYDLSKNDPWKEPFEKLEFIVIPFLLG 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7445165 7447706 - CrPI670011_07g008760.1 Cre07g0876 503457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0876 266 Gene3D Protein tyrosine phosphatase superfamily 75 259 IPR029021 -
Cre07g0876 266 Pfam Dual specificity phosphatase, catalytic domain 115 230 IPR000340 GO:0016311(InterPro)
Cre07g0876 266 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 234 IPR029021 -
Cre07g0876 266 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311(InterPro)
Cre07g0876 266 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203(InterPro)
Cre07g0876 266 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 55 250 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Cre07g0876 266 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470(InterPro)
Cre07g0876 266 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 75 260 - -
Cre07g0876 266 SMART dsp_5 92 242 IPR020422 GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2324 Cre-Chr5:34808855 Cre07g0876 Cre-Chr7:7445165 1.30E-36 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0876 - - - 0.0