Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0895 ATGGCTTTTTACTCACCATTTTCCTCCCTCTTCCTCCTTCCTTTCTTCTTCATCTCTTTTCGCTTTGCTTTCGCCGACTACGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGCGGTGGTGATGCATCTGGCACCATGGGTGGAGCTTGTGGGTATGGGAACTTGTATAGCCAAGGGTACGGCACAAACACGGTGGCGCTTAGCACGGCGCTATTCAACAATGGGCTAAGTTGTGGGGCTTGCTTCGAAATGACTTGTACAAATGATCCTAAATGGTGCCTTCCTGGAACCATTAGGGTCACTGCCACCAACTTCTGCCCTCCTAACTTTGCTCTCCCCAACAACAATGGCGGCTGGTGCAACCCTCCACTCCAACACTTCGACATGGCTGAACCTGCCTTTCTTCAGATCGCACAGTACCGTGCTGGAATCGTCCCAGTCTCCTTTCGTAGAGTACCATGTATGAAAAAAGGTGGAGTGAGGTTCACAATCAATGGCCACTCCTACTTCAACCTTGTTTTGATCACGAACGTGGGCGGCGCAGGTGATGTCCACGCTGTGTCCATAAAAGGGTCTCGAACAGGATGGCAAGCCATGTCCAGAAATTGGGGCCAAAATTGGCAAAGCAACAACTATCTCAACGGCCAAGGTCTTTCCTTTCAAATCACTCTCAGCGATGGTCACACTCTCACTGCCTATAATCTCGTCCCTTCCAATTGGCAATTTGGCCAAACATTTGAAGGCCCTCAATTCTAA 759 50.33 MAFYSPFSSLFLLPFFFISFRFAFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQITLSDGHTLTAYNLVPSNWQFGQTFEGPQF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7955803 7958883 - CrPI670011_07g008950.1 Cre07g0895 503476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0895 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Cre07g0895 252 Gene3D - 160 252 IPR036749 -
Cre07g0895 252 CDD DPBB_EXPA_N 29 155 - -
Cre07g0895 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Cre07g0895 252 Pfam Lytic transglycolase 65 150 IPR009009 -
Cre07g0895 252 FunFam Expansin 21 156 - -
Cre07g0895 252 SMART dpbb_1 65 150 IPR007112 -
Cre07g0895 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Cre07g0895 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576(InterPro)
Cre07g0895 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576(InterPro)
Cre07g0895 252 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Cre07g0895 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Cre07g0895 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576(InterPro)
Cre07g0895 252 SUPERFAMILY Barwin-like endoglucanases 29 178 IPR036908 -
Cre07g0895 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Cre07g0895 252 PANTHER EXPANSIN-A15 17 252 IPR002963 GO:0009664(InterPro)
Cre07g0895 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Cre07g0895 252 FunFam Expansin 160 252 - -
Cre07g0895 252 Gene3D - 19 156 IPR036908 -
Cre07g0895 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664(InterPro)
Cre07g0895 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664(InterPro)
Cre07g0895 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664(InterPro)
Cre07g0895 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664(InterPro)
Cre07g0895 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664(InterPro)
Cre07g0895 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Cre07g0895 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664(InterPro)
Cre07g0895 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664(InterPro)
Cre07g0895 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1547 Cre-Chr1:28666400 Cre07g0895 Cre-Chr7:7955803 7.90E-86 dispersed
Cre04g0909 Cre-Chr4:27752284 Cre07g0895 Cre-Chr7:7955803 1.70E-105 dispersed
Cre07g0690 Cre-Chr7:4766594 Cre07g0895 Cre-Chr7:7955803 1.20E-103 dispersed
Cre07g0895 Cre-Chr7:7955803 Cre11g1406 Cre-Chr11:18373768 4.20E-106 dispersed
Cre10g0873 Cre-Chr10:9921863 Cre07g0895 Cre-Chr7:7955803 3.30E-68 transposed
Cre11g1052 Cre-Chr11:7965287 Cre07g0895 Cre-Chr7:7955803 5.30E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0895 - - - 0.0