Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0955 ATGGCATTGGATGAGGACGTCGTGCTGCGCGATGTCACCAATGCTGGTGTTGTCATCAGCGACCGCATTGCCAGAGAAGTTGCCACTCAACTTGATCTGGAGGAAGCGCTGGAAGCTTCCAGATACTCTAGCGATCCGTATACAACCCACCCCAGAGAGTGGCCTCCTCTAGTGGAAGTGGTGGATACTTGGGAGTTACCTCCAGTGCTTATAGAAAGATATAATGCTGCTGGAGGGGAAGGAACTGCCTTATGTGGAATATTTCCGGAAATACGAAGAGCTTGGGCATCTGTTGATAATTCTTTATTTCTTTGGCGATTTGACAAGCGGGATGGTCAATGTCCAGAGTTTAATGTGGAGGAGCAAGCCATCTGTGCCGTTGGCCTCACCAAATCCAAGCCTGGTGTTTTTGTTGAGGCAATACAATATCTTTTAATTCTAGCTACACCAGCAGAGTTGATTCTTGTAGGAGTATGCTCTTCTGGTGGTGCTGATGGTATGGATCCATATGCAGAGATTTCGCTGCAGCCTTTGCCAGAGTATACTATTGCGTCAGATGGAGTCACTATGACTTGCATCACTTGCACTGACAAAGGGCGAATTTTTTTGGCTGGCCGTGATGGCAACATTTATGAGCTTCATTACACATCTGGTTCTGGTTGGCAAAAGCGATGTCATAAAATTTGCCTTACTTCTGGTTTAGGAAGTGTGATATCAAGATGGGTTGTGCCAAATGTATTCAAGTTTGGAGCTGTTGATCCCATTGTTGAGATGATCTATGATAGTGAAAGATGCATTTTATATACAAGAACTGAGGAAATGAAAGTTCAAGTATTTGTGTTGGGGTCCAATGGTGATGGACCGCTTAAGAAAGTAGCAGAAGAAAGAAATCTGATCAATCAAAGAAATGGAACTTATGGAAGTAGACAGTCAAAAGGACCTAGAGCTATGAGTCGATCAACAATGCCATCTATTGTCTGCATATCACTCTTATCTACACTTGAATCAAAGTCAATACACCTTCTAGCGGTTTTATCTGATGGTAGAAGGATGTATTTAACCACTTCATCTTCAAATGGAAACTTGGGTGCATATAATTCCAACCATCAGACGCCAAGTTGTTTAAAAGTTGTGGCTACGAGGCCTTCTCCTCCTCTAGGTGTTGGCGGAGGACTTACATTTGGTGCCAACTCTATTTCTGGTAGACCTCAAAATGAAGAGCTGTTGCCGAAGGTTGAGACAGCATTTTACTCTGCTGGGACTTTAGTCCTCTCTGATTCATCACCACCAACTATATCTTCACTTCTCCTTGTGAGCAAGGATCCGGTAGCACAATCTTCCATATCTGGTACTTCAACCTTAAATGCAAGGACTTCTTTTGCTTTAAGGGAAATTGTTTCTTCTCTTCCTGTTGAAGGTCGAATGCTTTTTGTAGCAGATGTTTTACCCTTACCAGATGCTGCAGCCACTATGCAGTCTTTATATTCACAGATTGAATTTGGGGTGTCAGATTTCCCAGATGAGCATAGTGAAAAAGCAGTTGGAAAACTGTGGGCAAGAGGAGACCTATCTACCCAACACATATTACCTAGGAGGAGACTTGTTGTATTCAGTACCATGGGCATGATGGATATAGCTTTCAACAGGCCCGTGGATATTTTGAGAAGGTTGTTTGAGTCTAATTCGCCAAGATCAATTTTAGAAGACTTCTTCAAAAGGTTTGGAGCTGGTGAAGCAGCTGCCATGTGTCTAATGTTGGCTTCAAGGATTGTCCACTGTGAAACTCTCATAACCAGTGTTATTGCAGACAAGGCAGGTGAAGCTTTCGAGGATCCTAGAATTGTTGGGATGCCTCAACTTGGAGGCAATACTGCCTTGTCAGACACAAGAACTGCTGCTGGTGGGTTTAGCATGGGTCAGGTTGCTCAGGAGGCTGTGCCAGTATTTTCAGGTGCACATGAAGGGCTCTGCTTGTGTTCATCAAGATTGCTTTTTCCACTCTGGGAACTTCCTGTTGTGGCTGTTAAAGGTATCTCAGATTCTTCAACTACTTCACACAATGGATTAGTTGTATGTAGGCTTTCTGCTGGAGCCATGCAAATCCTTGAGCACAAGCTCCGTGCTCTTGAAAAGTTCCTAAGGTCGAGAAGGAACCAGAGAAGAGGTCTTTATGGTTGTGTAGCTGGCTTGGGAGATGTCTCAGGTTCTATTCTTTATGGTAGTGGTTCAGATCTTGTTTCTAGTGATCGGAATATGGTGAAAAGCATTTTTGGTACATACACAAGAAACATGGAATCTGCTGGGACTGGAGCTTCTAATAAAAGGCAGAGATTACCTTACAGTCCTGCTGAGTTGGCGGCCATGGAGGTCAGGGCAATGGAATGTATTAGACAGCTGCTGCTTAGATCTGCTGAAGCTTTATTTTTGCTTCAGCTTCTTTCTCAACACCACTTAACACGCTTGGTTCAGGGCTTGGATGATAATTTTAGGCAGGCAATAGCTCAATTGACTTTTAATCAGCTTGTTTGTTCAGCAGAGGGTGATAATCTTGCTACAAGACTTATATCTGCTCTAATGCAGTACTATACTGGTCCTGATGGCAGGGGAACTGTAGATGACATCAGTGGGAAATTAAGGGAAGGCTGTCCAAGCTACTTTAAAGAGTCTGACTATAAATTTTTCTTAGCCGTGGAATGTCTGGAGAGAGCTGCTGTGACTCTTGACCCAATGGAGAAAGAGAATCTTGCTAGGGAAGCCTTTAATTGTTTGAGTAAAATTCCAGAGTCTGCAGATTTACGGACTGTATGCAAACGTTTTGAGGATTTGAGATTCTATGAAGCAGTGGTTCGTTTGCCTCTGCAGAAAGCCCAGGCTCTTGATCCTGGAGGCAATGCTTTTAATGATCAAACTGATTTGGCTACTCGAGAACGTGCACTTTCCGAGCGTGAACAATGCTATGAAATAATTATAAGTGCTCTACGTTCTCTAAAAGGTGATGTCTCACCAAAGGAATTTGGATCTCCTATGAAGCCTGCTGCTTCAAGGTCCATTCCCGATATGGCAACACGTAGTAAATATATATGCCAGATTGTTCAGCTTGGAGTTCAATCCCCAGATAAAATATTCCATGATTACTTGTATCGGTCTATGATTGATTTGGGGCTTGACAATGAATTGTTAGAATATGGAGGACCAGATTTGGTACCGTTCCTGCAAAATGCTGGGCGGCATCCCATACAAGAGGTTCGAGCTGTCTCAGCTCTAACAGCTGGGGCTTCTCCTATTGGTCAGTCGGGAGCAGTTGGTGCAACAGATGAGGCCAAATTTTTTGATCTTTTAGCTCGATATTATGTTATGAAACGGCAACATTTGCTTGCTGCTCATGTGCTGCTAAGACTAGCTAGTAGACGCTCATCTGATCCTGGGGATGTTCTTACTTTGGAGGAGAGGTGCCAATACTTGAGCAATGCAGTTTTACAAGCAAAGAATGCAAACAGTTGCAAGGGGTTGGCAGGTTCTACCCCTGATACCTTAGACAATGGATTGCTTGAACAGCTTGAAGGGAAACTTGCTGTTCTTCGTTTCCAGATGAAAATTAAGGAGGAGCTGGAGGCTTTAGCTTCAAGAATAGAAGCCGTGGCAAGTACATCTGATTCAGTCCAAAATGAATTGATCCCAGAGAATGATTTGGCTGCTAATTCTAGTATTGCAAATATGGCTCGGCAGAAGGCTAAAGAGCTCTCATTGGAGTTAAAGACTATAACTCAGCTATACAATGAATATGCTGTTCCATTTGAGCTATGGGAGATATGTTTGGAAATGTTGTACTTTGCAAACTATTCTTCTGATGGCAATACTAGTATCGTCAGAGAAACTTGGGCTCGATTAATTGACCAAGCTCTATCTACGGGTGGCATCGCTGAAGCTTGTTCAGTACTAAAAAGGGTTGGCTTCCACATTTACCCTGGCGATGGAGCTGGAATACCTTTGGAGTCTCTTTGTCTTCACCTTGAGAAGGCTGCATTGGAGAGATCCGAATCAGGTGTTGAATCTATTGGGAATGATGATGTTGCAAGAGCCCTTATTGCTGTTTGCAAGGGTGCAACTGAGCCAGTATTGAATGCTTATGATCAATTGTTGTTGAATGGTGCAATTCTGCCATCACCCAAACTCAGGTTACGCCTCCTCCAATCTGTGTTAGTGGTACTCCATGAGTGGGCTATGTCAATATCTTCACAGACTGTGGGTAGAAGTGCAACTGCAGCATCTCTAGTTTTTGCTGGAAAATACTCTTTGGATCAAATAGCTAATTTCAACCAAGGGGTTCGGGACAAGATAGCCAGCGCTGCTAACAG 4355 43.44 MALDEDVVLRDVTNAGVVISDRIAREVATQLDLEEALEASRYSSDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDKRDGQCPEFNVEEQAICAVGLTKSKPGVFVEAIQYLLILATPAELILVGVCSSGGADGMDPYAEISLQPLPEYTIASDGVTMTCITCTDKGRIFLAGRDGNIYELHYTSGSGWQKRCHKICLTSGLGSVISRWVVPNVFKFGAVDPIVEMIYDSERCILYTRTEEMKVQVFVLGSNGDGPLKKVAEERNLINQRNGTYGSRQSKGPRAMSRSTMPSIVCISLLSTLESKSIHLLAVLSDGRRMYLTTSSSNGNLGAYNSNHQTPSCLKVVATRPSPPLGVGGGLTFGANSISGRPQNEELLPKVETAFYSAGTLVLSDSSPPTISSLLLVSKDPVAQSSISGTSTLNARTSFALREIVSSLPVEGRMLFVADVLPLPDAAATMQSLYSQIEFGVSDFPDEHSEKAVGKLWARGDLSTQHILPRRRLVVFSTMGMMDIAFNRPVDILRRLFESNSPRSILEDFFKRFGAGEAAAMCLMLASRIVHCETLITSVIADKAGEAFEDPRIVGMPQLGGNTALSDTRTAAGGFSMGQVAQEAVPVFSGAHEGLCLCSSRLLFPLWELPVVAVKGISDSSTTSHNGLVVCRLSAGAMQILEHKLRALEKFLRSRRNQRRGLYGCVAGLGDVSGSILYGSGSDLVSSDRNMVKSIFGTYTRNMESAGTGASNKRQRLPYSPAELAAMEVRAMECIRQLLLRSAEALFLLQLLSQHHLTRLVQGLDDNFRQAIAQLTFNQLVCSAEGDNLATRLISALMQYYTGPDGRGTVDDISGKLREGCPSYFKESDYKFFLAVECLERAAVTLDPMEKENLAREAFNCLSKIPESADLRTVCKRFEDLRFYEAVVRLPLQKAQALDPGGNAFNDQTDLATRERALSEREQCYEIIISALRSLKGDVSPKEFGSPMKPAASRSIPDMATRSKYICQIVQLGVQSPDKIFHDYLYRSMIDLGLDNELLEYGGPDLVPFLQNAGRHPIQEVRAVSALTAGASPIGQSGAVGATDEAKFFDLLARYYVMKRQHLLAAHVLLRLASRRSSDPGDVLTLEERCQYLSNAVLQAKNANSCKGLAGSTPDTLDNGLLEQLEGKLAVLRFQMKIKEELEALASRIEAVASTSDSVQNELIPENDLAANSSIANMARQKAKELSLELKTITQLYNEYAVPFELWEICLEMLYFANYSSDGNTSIVRETWARLIDQALSTGGIAEACSVLKRVGFHIYPGDGAGIPLESLCLHLEKAALERSESGVESIGNDDVARALIAVCKGATEPVLNAYDQLLLNGAILPSPKLRLRLLQSVLVVLHEWAMSISSQTVGRSATAASLVFAGKYSLDQIANFNQGVRDKIASAAN 1451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10437914 10449904 + CrPI670011_07g009550.1 Cre07g0955 503536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0955 1451 FunFam Nuclear pore complex protein NUP155 1056 1158 - -
Cre07g0955 1451 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 5 1451 IPR004870 GO:0000972(PANTHER)|GO:0005643(InterPro)|GO:0006405(PANTHER)|GO:0006606(PANTHER)|GO:0006913(InterPro)|GO:0017056(PANTHER)|GO:0017056(InterPro)|GO:0036228(PANTHER)|GO:0044611(PANTHER)
Cre07g0955 1451 Pfam Nup133 N terminal like 54 497 IPR014908 -
Cre07g0955 1451 Coils Coil 1237 1257 - -
Cre07g0955 1451 FunFam Nuclear pore complex protein NUP155 893 1053 - -
Cre07g0955 1451 Coils Coil 1183 1203 - -
Cre07g0955 1451 Gene3D - 531 882 - -
Cre07g0955 1451 Gene3D - 1183 1440 IPR042538 -
Cre07g0955 1451 Gene3D - 893 1052 IPR042533 -
Cre07g0955 1451 Gene3D Nucleoporin, helical domain, central subdomain 1056 1158 IPR042537 -
Cre07g0955 1451 FunFam Nuclear pore complex protein NUP155 1184 1421 - -
Cre07g0955 1451 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 650 1413 IPR007187 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0955 K14312 - - csv:101212476 2687.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0955 Cre-Chr7:10437914 Cre09g1133 Cre-Chr9:12150914 4.00E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g495 . . . . . . Bma14g01933 Bma15g00028 . . . . . . . . . Bhi07g00386 . . . . . . Cla07g00539 Cam07g0580 Cec07g0641 Cco07g0607 Clacu07g0584 Cmu07g0619 Cre07g0955 . . . . Lsi04g01104 . . Cme10g01618 . . Bda07g01751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007657 2 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 34