Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0972 ATGGAATCCGCAATGATTATGAAAGTCTTTCAGCAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCTGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACAGGTTTCTGCTATTTCTATACGTGCTTTTCCTCTCTTTTCTGCGTTTCTTATGAACAAGGGTATTTCCATGGGTTTTCCTTGGTATCGTGTTCATACCGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATACAAGTATTAGATTCAATCCTGATTGGAAATGGGGCTGTTGAGGAGGTATTGAAAGAGAGCTTTAAAATCTATTGTGCTATTAACGATGGAATTATAAATCTCGTTGACAAGTTTTTTGAGATGCCAAGACATGAGGCTATCAAAGCCCTTGATATCTATAAAAGAGCTGGCCAACAGGCAGGAAGCCTATCAGATTTCTATGATATCTGCAAAGGGTTAGAACTTGCTCGGAATTTCCAGTTTCCTGTTTTAAGAGAGCCTCCACAGTCATTTCTTAATACGATGGAAGAGTATATTAGGGAGGCACCACGAATGGTTACAGTACCAAATGAACCACTGCTGCAACTTACCTACAAGCCGGAAGAATCTCTTTCCGAGGATCAAAACTTACCCACTGATCAGCCGGAGGCTTCTCCTTCAGATGATCTTTCTATTACTCCTGTTGAAACGGCTCCACCACCGCCTCCAGCACCAGCTCCTGCTCCTGAAAGCCATGCAGAGACTGGAGATTTATTGGGATTGAGTCTTGCTACCACTGAAGTATCTGAAATTGAGGAGAGAAATGCTTTGGCTTTAGCTATAGTTCCTTCTGGTGATACAGCAACACCCACTTTTCATTCCAATGGTGCACATACAAATGATTTCGATCCTACTGGTTGGGAGCTCGCCTTGGTCACCACTCCAAGTAGTAACCTTTCATCAACTAATGAGAGACAACTGGCTGGTGGATTGGACACACTTACTCTCGATAGTTTATATGATGAAGGTGCATATAGAGCTTCTCTACAGCCCGTGTACGGTAAGCCCGCACCAAATCCGTTTGAGGTGCAAGATCCGTTTGCATATTCGAACGCCATTGCTCCACCTCCATCAGTTCAAATGGCACCACTACCTCAGCAGCAGGCCAATCCTTTTGGTCCTTTTCAACCTACCTTCCCACAGCAGCAACAGCCCTTTTCAATGGACCCAACAAATCCTTTTGGTGATGCAGGTTTTGGAGCATTCCCTGCCCCTAACCACCATACTGTACCACCGCCTGCAAGCAACCCGTTCGGAAGCACAGGCCTGCTGTAG 1479 44.76 MESAMIMKVFQQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKQVSAISIRAFPLFSAFLMNKGISMGFPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPIQVLDSILIGNGAVEEVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALDIYKRAGQQAGSLSDFYDICKGLELARNFQFPVLREPPQSFLNTMEEYIREAPRMVTVPNEPLLQLTYKPEESLSEDQNLPTDQPEASPSDDLSITPVETAPPPPPAPAPAPESHAETGDLLGLSLATTEVSEIEERNALALAIVPSGDTATPTFHSNGAHTNDFDPTGWELALVTTPSSNLSSTNERQLAGGLDTLTLDSLYDEGAYRASLQPVYGKPAPNPFEVQDPFAYSNAIAPPPSVQMAPLPQQQANPFGPFQPTFPQQQQPFSMDPTNPFGDAGFGAFPAPNHHTVPPPASNPFGSTGLL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11432628 11438255 + CrPI670011_07g009720.1 Cre07g0972 503553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0972 492 Gene3D ANTH domain 141 250 IPR014712 GO:0005545(InterPro)|GO:0030136(InterPro)|GO:0030276(InterPro)|GO:0048268(InterPro)
Cre07g0972 492 PANTHER CLATHRIN ASSEMBLY PROTEIN 147 448 IPR045192 GO:0000149(PANTHER)|GO:0005545(PANTHER)|GO:0005546(PANTHER)|GO:0005905(PANTHER)|GO:0006900(PANTHER)|GO:0030136(PANTHER)|GO:0032050(PANTHER)|GO:0048268(InterPro)|GO:0072583(InterPro)|GO:0072583(PANTHER)
Cre07g0972 492 MobiDBLite consensus disorder prediction 432 492 - -
Cre07g0972 492 MobiDBLite consensus disorder prediction 256 302 - -
Cre07g0972 492 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 7 59 - -
Cre07g0972 492 SUPERFAMILY GAT-like domain 147 236 - -
Cre07g0972 492 Pfam ANTH domain 147 236 IPR011417 GO:0005543(InterPro)
Cre07g0972 492 MobiDBLite consensus disorder prediction 256 280 - -
Cre07g0972 492 Pfam Photosystem II protein 81 140 IPR000932 GO:0009521(InterPro)|GO:0009767(InterPro)|GO:0016020(InterPro)|GO:0016168(InterPro)|GO:0019684(InterPro)
Cre07g0972 492 SUPERFAMILY Photosystem II antenna protein-like 82 136 IPR036001 GO:0009521(InterPro)|GO:0009767(InterPro)|GO:0016020(InterPro)|GO:0016168(InterPro)|GO:0019684(InterPro)
Cre07g0972 492 MobiDBLite consensus disorder prediction 432 458 - -
Cre07g0972 492 MobiDBLite consensus disorder prediction 283 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0972 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0972 Cre-Chr7:11432628 Cre11g1605 Cre-Chr11:26671158 1.50E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g460 . . . . . . . . Cmo04g01091 . Cma04g01013 Cma04g00065 Car04g00949 Car04g00062 . . . . . . . . . . Cla07g00570 Cam07g0596 Cec07g0663 Cco07g0636 Clacu07g0599 Cmu07g0633 Cre07g0972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01148 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001235 1 2 1 3 2 3 4 3 2 2 2 2 3 1 2 4 3 4 4 3 2 2 2 2 3 3 2 6 2 2 77