Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0983 ATGAACAATCGGGCTGGACTCCTTCGAATTCGCCTGCTTCGAGGCCACAATCTCGCCATTCGCGATGCTCCAACTCGTAGCAGCGATCCCTACGTCGTCATCTCCTGCGCTAACCAGAAATTCAAATCTCGCGTGGTGAAGAAAAACTGCAATCCAGAATGGAACGAGGAATTCACATTTTCGATTACAGATGTCAACACGGCAATCAAATTGGCAGTGTTCGACAAAGATAGATTCACAAAGGACGATGGAATGGGGGATGCGGAGATCGACATAAAACCGTACATAGAGTGTTTGAATATGGGGTTAGAGAATCTGCCAAATGGTTGTGTGGTGAAAAGGGTTCAACCAAGCAGATCAAACAGCCTTGCAGATGAGAGTTCTTGTGTTTGGAACGATGGTAAGATCATCCAAGACATGACTCTCAGATTGCAGAATGTTGAATGTGGTGAAATCATGATTCAGCTTCAGATGTTCAATGTTTCGATTTTCAAAGGCCTAAGAACCTACTCTTTAGCCTGA 522 44.64 MNNRAGLLRIRLLRGHNLAIRDAPTRSSDPYVVISCANQKFKSRVVKKNCNPEWNEEFTFSITDVNTAIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLENLPNGCVVKRVQPSRSNSLADESSCVWNDGKIIQDMTLRLQNVECGEIMIQLQMFNVSIFKGLRTYSLA 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11736647 11738042 - CrPI670011_07g009830.1 Cre07g0983 503564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0983 173 Gene3D C2 domain 2 165 IPR035892 -
Cre07g0983 173 CDD C2_ArfGAP 6 150 - -
Cre07g0983 173 SMART C2_3c 7 104 IPR000008 -
Cre07g0983 173 Pfam C2 domain 6 94 IPR000008 -
Cre07g0983 173 PRINTS C2 domain signature 48 61 IPR000008 -
Cre07g0983 173 PRINTS C2 domain signature 24 36 IPR000008 -
Cre07g0983 173 PRINTS C2 domain signature 69 77 IPR000008 -
Cre07g0983 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 161 IPR035892 -
Cre07g0983 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 162 IPR044562 -
Cre07g0983 173 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0983 Cre-Chr7:11736647 Cre09g1896 Cre-Chr9:37696717 3.90E-58 dispersed
Cre07g0983 Cre-Chr7:11736647 Cre06g2297 Cre-Chr6:30918642 3.30E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0983 - - - 0.0