Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g0994 ATGGCTGGAGATATCGAGCAGCCGTTTACCTTTAATTTTCAGGTAGAGTCTGCAATCTCAGACTCCATATCATTTGGAAGGTTTGAAAAAGAATCTTTATCTTGGGAAAGGAGGTCATCATTCTCTCATAATCGTTATCTAGAAGAGGTAGAGAAATTCTCCAAACCGGGTTCAGTCAATGAGAAAAAGGCTTACTTTGAGGCTCATTTCAAGAAAAAGGGAGGATTGCTTGGTCAGAATTCGGCAGAGTCCCATACAATTGAGAATGACGTACCAGAGCAAGTGAATCAAGAGGCAGAAGTTGAGATTATAAACATGGAGAATCATGACGGCCATTTTGATGATAGCTCTGTCAGTTCACAAGACCATGGGGACCATTTGGTGACAAAATTTGAAGAAATGCCAAAACATGGAATTTCAGCTCCTAATCCTAAATTTGAAAATTCTTTCAGCAGCGTTGTTAATGCTGAAATAAATGAACAAGATGACACTGGGGAGAACAAGTTCTCAACTTTTGTAAGTGATGAACCAGAGGTTGAAATAAATCAAGATGCCAAGAGTCATGGAATGAGTGAGAATATGCAACCTAAAGCCATGGAGGCAGTCCCCAAAACTGAACTAGTGAAGAAAGCTGGCAACAACTGCTCAGGAAGTCAGCAAACTCTCGCTTCAAAGATGATTTCTAGAAGGCAAACAAAGGCCTCCTCCAGATCTCAGGCTAGTATTCATCAGAGTCCAAGAAATTTTTCGGGTGATGTTCTCAAATCCAGTAAAAGCAAAGGCGAGCCTTCACATACAACTTGCACAGAAGCTCATCCATCAAAAACTGCCATTTCTCGTGCAAATGCTGTCCGTCGAATACCCAAAGTTGAGGATTCTAAAGTTCTCAAGGGAAGAACTGTTCTCGAGAGTAGAAGATGTAGTGGTGAGAAGGTACAAACTTCTGGAGTATTATATTCTTCTCCGTCGAAGCTCGAGGCTAGATCATATTTAAAGACAACCACCAGGCAAAGTCGGCCTGTCAACTCAGCCATGCAAGATACAGGGAAAAGTGCTTCAGCTTCAAATAGAACGGGCTTGGCAGAAAGGAGAAAACAGAACAAGCCAGATTCTGAAATGAAGAAATTACAGAAAAACGTTGACATCAGATCAAAACCAATACCGTCTTCTTATGGTGCAGTTCGACCAGAGTCAGATGGGAAGAAGGCTGTGTTTAGTGGTACCAAAGCAAGAAACACTTTAAGGAAGTCCACAGCTATGGCATCGTCCTTGCATTCGCAGTTAGGAAAAGACATCGATTCCTCTGCAAGGGAAGCACCATATACTTCAAAAAGCATGAGCTACCACGCAGGCGTGCATGTTCAAGCAAGCAGTAATTCGTTGAGTTCATCAGCCAACCACCAAGAAACCGAAAACAAGAGAAGGAAGGACAAAACGAAGGAGAAAGAACCCAATGTACAGCAACCCCGAATTTTGGAGAATTATAAGACGACATCCAAAGAAGGAAGCGAGGGGAGGCAGAAAGTCGGGGCGCAGAGAAGCATGAATTTGATGGGGAGATCGAGGGACGTTAAGGGTGTTGCTGGCTCCGGAATGGGACGACATGCTGTTGGTGTTACGTCGTAA 1626 43.11 MAGDIEQPFTFNFQVESAISDSISFGRFEKESLSWERRSSFSHNRYLEEVEKFSKPGSVNEKKAYFEAHFKKKGGLLGQNSAESHTIENDVPEQVNQEAEVEIINMENHDGHFDDSSVSSQDHGDHLVTKFEEMPKHGISAPNPKFENSFSSVVNAEINEQDDTGENKFSTFVSDEPEVEINQDAKSHGMSENMQPKAMEAVPKTELVKKAGNNCSGSQQTLASKMISRRQTKASSRSQASIHQSPRNFSGDVLKSSKSKGEPSHTTCTEAHPSKTAISRANAVRRIPKVEDSKVLKGRTVLESRRCSGEKVQTSGVLYSSPSKLEARSYLKTTTRQSRPVNSAMQDTGKSASASNRTGLAERRKQNKPDSEMKKLQKNVDIRSKPIPSSYGAVRPESDGKKAVFSGTKARNTLRKSTAMASSLHSQLGKDIDSSAREAPYTSKSMSYHAGVHVQASSNSLSSSANHQETENKRRKDKTKEKEPNVQQPRILENYKTTSKEGSEGRQKVGAQRSMNLMGRSRDVKGVAGSGMGRHAVGVTS 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12134604 12138635 + CrPI670011_07g009940.1 Cre07g0994 503575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g0994 541 MobiDBLite consensus disorder prediction 438 467 - -
Cre07g0994 541 MobiDBLite consensus disorder prediction 361 381 - -
Cre07g0994 541 MobiDBLite consensus disorder prediction 212 276 - -
Cre07g0994 541 MobiDBLite consensus disorder prediction 323 541 - -
Cre07g0994 541 MobiDBLite consensus disorder prediction 323 360 - -
Cre07g0994 541 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 8 488 IPR044216 -
Cre07g0994 541 MobiDBLite consensus disorder prediction 410 430 - -
Cre07g0994 541 MobiDBLite consensus disorder prediction 468 487 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g0994 K28095 - - csv:101208552 804.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0994 Cre-Chr7:12134604 Cre08g1682 Cre-Chr8:29245287 4.60E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g418 . . . . . . . . Cmo04g01083 . Cma04g01004 . Car04g00941 Car04g00058 . . . . . . . . . . Cla07g00588 Cam07g0614 Cec07g0681 Cco07g0662 Clacu07g0623 Cmu07g0648 Cre07g0994 Cone13ag0767 Cone19ag0770 . . Lsi04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01034 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009363 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34