Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1008 ATGGCCGGGATTGTCGCCGGCGACAGCGACAGTGCACCGGCTTTGGCTCTACTGGACTTTGTTCGCGATGTTGTTCGAATGTCGGCGGGGACGAACACTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGGGACTTCGATGGCGTCCAATTTCGACCTGTTGATGCATCTTCGTCTTCTTCTTCTTCTTGTGGCGCTGTTACTGTGAGGGATTCGTCTCAGTTTCCATGGCTTTGTGATTTAGTGACGGCATTGAAGGATACTAAGCGCCTCATTTTCATCGCTTCTACTTTCCGGTCCTGCGGCTCTTCTTCTGAAGAAGTTGCCAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGCAATCTTCCATATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAATTGAGAAGAGCAGCAGAAAAATATGGGTCTCTGACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTCGAAGAAAAATGTGGATCTCTTAAATTTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTATTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGGCGGTGTGGATCAATTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTAATGGACAGGATAATGACTCTGCCAGAAAGAGTGGAGACCAGGTGAAGAACCCAGATGGAGTTTCAATCCCTGATGATTTTTTATGCCCCATATCCTTGGAAATAATGAGAGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGCCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGCTAATAACAATATTGAGCAACCTACGGGATTAACCAATGGGAAGATCAAAAAGTGTGACGGATCATACCGTGACGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTAACTAGCCATTCGATTGAGGAGCGGAGAGCATCTGTGACTGAACTTCGATCTCTATCTAAAAGAAGCACGGATAATAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCATTGGTCAATCTATTAACTTCTGATGACGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGATTGATTATGCTTGCTGGTGCAATACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCTATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGAAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGGACTCAGTTAACTCGATGATCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACCGGATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGACAACCTTTCTTGTATAAGTAGGCTTGGCGCCGTGATTCCACTGACAGAGCTTGCCAAGAGTGGCACGGAGAGAGCAAAAAGGAAGGCTACTTCATTGTTGGAGCATCTTCGAAAACTGCAGCAGCTATAG 1974 43.97 MAGIVAGDSDSAPALALLDFVRDVVRMSAGTNTGEVFKKDCTDLVRRIVLLTHLFEEIRDFDGVQFRPVDASSSSSSSCGAVTVRDSSQFPWLCDLVTALKDTKRLIFIASTFRSCGSSSEEVAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLSKKNVDLLNLNNWVDNFDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQLIFKGLEKLPSSSEACSNGQDNDSARKSGDQVKNPDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCANNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12813482 12816641 - CrPI670011_07g010080.1 Cre07g1008 503589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1008 657 Coils Coil 637 657 - -
Cre07g1008 657 Gene3D - 459 555 IPR011989 -
Cre07g1008 657 Pfam U-box domain 278 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre07g1008 657 Gene3D - 361 458 IPR011989 -
Cre07g1008 657 FunFam RING-type E3 ubiquitin transferase 361 454 - -
Cre07g1008 657 SMART arm_5 530 570 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART arm_5 448 488 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART arm_5 407 447 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART arm_5 571 611 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART arm_5 489 529 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART arm_5 613 653 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 FunFam RING-type E3 ubiquitin transferase 277 352 - -
Cre07g1008 657 SUPERFAMILY RING/U-box 274 351 - -
Cre07g1008 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART Ubox_2 281 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre07g1008 657 FunFam RING-type E3 ubiquitin transferase 557 656 - -
Cre07g1008 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 542 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 MobiDBLite consensus disorder prediction 251 275 - -
Cre07g1008 657 Pfam Armadillo/beta-catenin-like repeat 407 446 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SUPERFAMILY ARM repeat 368 651 IPR016024 -
Cre07g1008 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 Coils Coil 153 173 - -
Cre07g1008 657 FunFam RING-type E3 ubiquitin transferase 455 555 - -
Cre07g1008 657 PANTHER U BOX DOMAIN-CONTAINING 36 653 - -
Cre07g1008 657 CDD RING-Ubox_PUB 279 331 IPR045210 -
Cre07g1008 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
Cre07g1008 657 Gene3D - 556 656 IPR011989 -
Cre07g1008 657 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1008 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2329 Cre-Chr2:36774721 Cre07g1008 Cre-Chr7:12813482 7.50E-62 dispersed
Cre05g2297 Cre-Chr5:34538688 Cre07g1008 Cre-Chr7:12813482 9.20E-09 dispersed
Cre07g1008 Cre-Chr7:12813482 Cre09g1916 Cre-Chr9:37892964 3.70E-101 dispersed
Cre07g1008 Cre-Chr7:12813482 Cre03g0473 Cre-Chr3:3130810 3.80E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g412 . . . . . Bpe10g00993 Bma14g01592 . Cmo04g01075 . Cma04g00997 . Car04g00936 Car04g00053 . . . . . . . . . . Cla07g00605 Cam07g0630 Cec07g0695 Cco07g0680 Clacu07g0636 Cmu07g0660 Cre07g1008 Cone13ag0773 Cone19ag0775 . . Lsi04g01143 . . Cme10g01508 Blo06g01023 Blo11g00735 . . Bpe11g01609 . . . . . Cmo15g00984 . Cma15g00946 . . . . . . . . . . . Cla01g00596 Cam01g0624 Cec01g0615 Cco01g0639 Clacu01g0615 Cmu01g0588 Cre09g1916 Lsi09g00646 Csa05g01046 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1678 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.7
Cre02g1560 . 279 923 U-box Gene Family AT2G23140 66.6 2.1e-125 446.8
Cre08g1657 . 1 777 U-box Gene Family AT1G24330 59.9 1.4e-245 846.3
Cre11g1810 . 1 755 U-box Gene Family AT1G24330 58.3 3.8e-230 795.0
Cre08g1657 . 1 776 U-box Gene Family AT1G67530 59.6 3.3e-242 835.1
Cre11g1810 . 1 756 U-box Gene Family AT1G67530 57.3 2.6e-226 782.3
Cre04g1857 . 1 362 U-box Gene Family AT4G21350 62.3 1.2e-120 430.3
Cre07g0573 . 135 460 U-box Gene Family AT3G07360 55.3 4.2e-82 302.0
Cre07g1008 . 265 452 U-box Gene Family AT1G71020 70.9 9.0e-73 271.6
Cre09g1916 . 1078 1282 U-box Gene Family AT1G71020 55.6 1.9e-54 210.7
Cre05g2297 . 249 416 U-box Gene Family AT1G71020 57.9 7.7e-48 188.7
Cre03g0473 . 281 450 U-box Gene Family AT1G71020 57.8 1.0e-47 188.3
Cre02g2329 . 255 425 U-box Gene Family AT1G71020 57.6 1.5e-46 184.5
Cre07g1008 . 16 656 U-box Gene Family AT1G23030 56.8 6.9e-110 395.2
Cre03g0473 . 116 655 U-box Gene Family AT2G28830 60.1 5.9e-103 372.1
Cre02g2329 . 93 635 U-box Gene Family AT2G28830 50.5 3.4e-98 356.3
Cre03g0473 . 24 689 U-box Gene Family AT3G46510 68.4 3.2e-169 592.4
Cre02g2329 . 3 638 U-box Gene Family AT3G46510 66.1 1.4e-156 550.4
Cre05g2297 . 16 623 U-box Gene Family AT3G46510 59.0 3.8e-122 436.0
Cre02g1342 . 36 640 U-box Gene Family AT3G46510 50.2 6.8e-87 318.9
Cre05g2297 . 12 625 U-box Gene Family AT3G54850 68.6 5.0e-164 575.1
Cre02g2329 . 13 628 U-box Gene Family AT3G54850 57.3 5.6e-115 412.1
Cre03g0473 . 31 650 U-box Gene Family AT3G54850 55.4 2.9e-103 373.2
Cre02g1342 . 92 644 U-box Gene Family AT5G42340 64.2 7.9e-128 454.9
Cre04g0745 . 9 669 U-box Gene Family AT5G01830 57.8 7.9e-200 694.1
Cre03g0979 . 1 714 U-box Gene Family AT1G29340 68.0 1.9e-247 852.4
Cre05g1302 . 27 442 U-box Gene Family AT5G37490 51.7 1.3e-110 397.1
Cre04g0706 . 4 422 U-box Gene Family AT3G52450 52.4 4.4e-119 425.2
Cre10g1945 . 1 403 U-box Gene Family AT3G52450 50.9 3.9e-115 412.1
Cre10g1945 . 1 403 U-box Gene Family AT2G35930 55.8 1.7e-120 429.9
Cre04g0706 . 7 422 U-box Gene Family AT2G35930 51.4 5.1e-117 418.3
Cre05g1190 . 9 424 U-box Gene Family AT3G19380 64.4 2.2e-147 519.2
Cre05g1190 . 1 424 U-box Gene Family AT1G49780 64.6 6.6e-152 534.3
Cre04g1187 . 1 407 U-box Gene Family AT5G64660 53.9 4.6e-121 431.8
Cre04g1187 . 1 407 U-box Gene Family AT5G09800 50.8 1.2e-105 380.6
Cre05g2828 . 1 454 U-box Gene Family AT3G49810 63.0 1.5e-154 543.1
Cre08g1608 . 1 456 U-box Gene Family AT3G49810 62.3 8.2e-153 537.3
Cre08g1608 . 1 456 U-box Gene Family AT5G65920 63.4 1.4e-152 536.6
Cre05g2828 . 1 454 U-box Gene Family AT5G65920 61.8 2.1e-148 522.7
Cre05g0232 . 72 943 U-box Gene Family AT2G45910 52.6 5.5e-235 811.2
Cre09g2062 . 65 841 U-box Gene Family AT4G25160 51.1 1.8e-217 753.1
Cre01g0585 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cre01g1292 . 29 498 U-box Gene Family AT5G40140 51.9 5.2e-56 216.1
Cre08g0873 . 26 834 U-box Gene Family AT1G76390 61.5 3.0e-270 928.3
Cre08g0873 . 35 834 U-box Gene Family AT1G20780 62.0 3.5e-279 958.0
Cre08g1657 . 1 779 U-box Gene Family AT1G27910 62.8 1.6e-268 922.5
Cre11g1810 . 1 767 U-box Gene Family AT1G27910 62.4 5.7e-263 904.0
Cre04g1378 . 443 1034 U-box Gene Family AT5G67530 74.2 3.2e-261 897.9
Cre10g1992 . 12 162 U-box Gene Family AT5G67530 50.3 1.0e-41 168.7
Cre05g0294 . 656 788 U-box Gene Family AT5G67530 56.4 2.5e-40 164.1
Cre05g0488 . 1 517 U-box Gene Family AT1G04510 74.4 5.7e-222 767.3
Cre05g0488 . 1 486 U-box Gene Family AT2G33340 73.6 5.1e-209 724.2
Cre07g0572 . 10 278 U-box Gene Family AT3G07370 66.5 2.0e-101 365.9
Cre10g1678 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.7
Cre02g1560 . 279 923 U-box Gene Family AT2G23140 66.6 2.1e-125 446.8
Cre08g1657 . 1 777 U-box Gene Family AT1G24330 59.9 1.4e-245 846.3
Cre11g1810 . 1 755 U-box Gene Family AT1G24330 58.3 3.8e-230 795.0
Cre08g1657 . 1 776 U-box Gene Family AT1G67530 59.6 3.3e-242 835.1
Cre11g1810 . 1 756 U-box Gene Family AT1G67530 57.3 2.6e-226 782.3
Cre04g1857 . 1 362 U-box Gene Family AT4G21350 62.3 1.2e-120 430.3
Cre07g0573 . 135 460 U-box Gene Family AT3G07360 55.3 4.2e-82 302.0
Cre07g1008 . 265 452 U-box Gene Family AT1G71020 70.9 9.0e-73 271.6
Cre09g1916 . 1078 1282 U-box Gene Family AT1G71020 55.6 1.9e-54 210.7
Cre05g2297 . 249 416 U-box Gene Family AT1G71020 57.9 7.7e-48 188.7
Cre03g0473 . 281 450 U-box Gene Family AT1G71020 57.8 1.0e-47 188.3
Cre02g2329 . 255 425 U-box Gene Family AT1G71020 57.6 1.5e-46 184.5
Cre07g1008 . 16 656 U-box Gene Family AT1G23030 56.8 6.9e-110 395.2
Cre03g0473 . 116 655 U-box Gene Family AT2G28830 60.1 5.9e-103 372.1
Cre02g2329 . 93 635 U-box Gene Family AT2G28830 50.5 3.4e-98 356.3
Cre03g0473 . 24 689 U-box Gene Family AT3G46510 68.4 3.2e-169 592.4
Cre02g2329 . 3 638 U-box Gene Family AT3G46510 66.1 1.4e-156 550.4
Cre05g2297 . 16 623 U-box Gene Family AT3G46510 59.0 3.8e-122 436.0
Cre02g1342 . 36 640 U-box Gene Family AT3G46510 50.2 6.8e-87 318.9
Cre05g2297 . 12 625 U-box Gene Family AT3G54850 68.6 5.0e-164 575.1
Cre02g2329 . 13 628 U-box Gene Family AT3G54850 57.3 5.6e-115 412.1
Cre03g0473 . 31 650 U-box Gene Family AT3G54850 55.4 2.9e-103 373.2
Cre02g1342 . 92 644 U-box Gene Family AT5G42340 64.2 7.9e-128 454.9
Cre04g0745 . 9 669 U-box Gene Family AT5G01830 57.8 7.9e-200 694.1
Cre03g0979 . 1 714 U-box Gene Family AT1G29340 68.0 1.9e-247 852.4
Cre05g1302 . 27 442 U-box Gene Family AT5G37490 51.7 1.3e-110 397.1
Cre04g0706 . 4 422 U-box Gene Family AT3G52450 52.4 4.4e-119 425.2
Cre10g1945 . 1 403 U-box Gene Family AT3G52450 50.9 3.9e-115 412.1
Cre10g1945 . 1 403 U-box Gene Family AT2G35930 55.8 1.7e-120 429.9
Cre04g0706 . 7 422 U-box Gene Family AT2G35930 51.4 5.1e-117 418.3
Cre05g1190 . 9 424 U-box Gene Family AT3G19380 64.4 2.2e-147 519.2
Cre05g1190 . 1 424 U-box Gene Family AT1G49780 64.6 6.6e-152 534.3
Cre04g1187 . 1 407 U-box Gene Family AT5G64660 53.9 4.6e-121 431.8
Cre04g1187 . 1 407 U-box Gene Family AT5G09800 50.8 1.2e-105 380.6
Cre05g2828 . 1 454 U-box Gene Family AT3G49810 63.0 1.5e-154 543.1
Cre08g1608 . 1 456 U-box Gene Family AT3G49810 62.3 8.2e-153 537.3
Cre08g1608 . 1 456 U-box Gene Family AT5G65920 63.4 1.4e-152 536.6
Cre05g2828 . 1 454 U-box Gene Family AT5G65920 61.8 2.1e-148 522.7
Cre05g0232 . 72 943 U-box Gene Family AT2G45910 52.6 5.5e-235 811.2
Cre09g2062 . 65 841 U-box Gene Family AT4G25160 51.1 1.8e-217 753.1
Cre01g0585 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cre01g1292 . 29 498 U-box Gene Family AT5G40140 51.9 5.2e-56 216.1
Cre08g0873 . 26 834 U-box Gene Family AT1G76390 61.5 3.0e-270 928.3
Cre08g0873 . 35 834 U-box Gene Family AT1G20780 62.0 3.5e-279 958.0
Cre08g1657 . 1 779 U-box Gene Family AT1G27910 62.8 1.6e-268 922.5
Cre11g1810 . 1 767 U-box Gene Family AT1G27910 62.4 5.7e-263 904.0
Cre04g1378 . 443 1034 U-box Gene Family AT5G67530 74.2 3.2e-261 897.9
Cre10g1992 . 12 162 U-box Gene Family AT5G67530 50.3 1.0e-41 168.7
Cre05g0294 . 656 788 U-box Gene Family AT5G67530 56.4 2.5e-40 164.1
Cre05g0488 . 1 517 U-box Gene Family AT1G04510 74.4 5.7e-222 767.3
Cre05g0488 . 1 486 U-box Gene Family AT2G33340 73.6 5.1e-209 724.2
Cre07g0572 . 10 278 U-box Gene Family AT3G07370 66.5 2.0e-101 365.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005370 2 1 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 1 40