Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1008 ATGGCCGGGATTGTCGCCGGCGACAGCGACAGTGCACCGGCTTTGGCTCTACTGGACTTTGTTCGCGATGTTGTTCGAATGTCGGCGGGGACGAACACTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGGGACTTCGATGGCGTCCAATTTCGACCTGTTGATGCATCTTCGTCTTCTTCTTCTTCTTGTGGCGCTGTTACTGTGAGGGATTCGTCTCAGTTTCCATGGCTTTGTGATTTAGTGACGGCATTGAAGGATACTAAGCGCCTCATTTTCATCGCTTCTACTTTCCGGTCCTGCGGCTCTTCTTCTGAAGAAGTTGCCAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGCAATCTTCCATATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAATTGAGAAGAGCAGCAGAAAAATATGGGTCTCTGACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTCGAAGAAAAATGTGGATCTCTTAAATTTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTATTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGGCGGTGTGGATCAATTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTAATGGACAGGATAATGACTCTGCCAGAAAGAGTGGAGACCAGGTGAAGAACCCAGATGGAGTTTCAATCCCTGATGATTTTTTATGCCCCATATCCTTGGAAATAATGAGAGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGCCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGCTAATAACAATATTGAGCAACCTACGGGATTAACCAATGGGAAGATCAAAAAGTGTGACGGATCATACCGTGACGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTAACTAGCCATTCGATTGAGGAGCGGAGAGCATCTGTGACTGAACTTCGATCTCTATCTAAAAGAAGCACGGATAATAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCATTGGTCAATCTATTAACTTCTGATGACGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGATTGATTATGCTTGCTGGTGCAATACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCTATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGAAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGGACTCAGTTAACTCGATGATCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACCGGATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGACAACCTTTCTTGTATAAGTAGGCTTGGCGCCGTGATTCCACTGACAGAGCTTGCCAAGAGTGGCACGGAGAGAGCAAAAAGGAAGGCTACTTCATTGTTGGAGCATCTTCGAAAACTGCAGCAGCTATAG 1974 43.97 MAGIVAGDSDSAPALALLDFVRDVVRMSAGTNTGEVFKKDCTDLVRRIVLLTHLFEEIRDFDGVQFRPVDASSSSSSSCGAVTVRDSSQFPWLCDLVTALKDTKRLIFIASTFRSCGSSSEEVAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLSKKNVDLLNLNNWVDNFDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQLIFKGLEKLPSSSEACSNGQDNDSARKSGDQVKNPDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCANNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12813482 12816641 - CrPI670011_07g010080.1 Cre07g1008 503589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1008 657 Coils Coil 637 657 - -
Cre07g1008 657 Gene3D - 459 555 IPR011989 -
Cre07g1008 657 Pfam U-box domain 278 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre07g1008 657 Gene3D - 361 458 IPR011989 -
Cre07g1008 657 FunFam RING-type E3 ubiquitin transferase 361 454 - -
Cre07g1008 657 SMART arm_5 530 570 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART arm_5 448 488 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART arm_5 407 447 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART arm_5 571 611 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART arm_5 489 529 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART arm_5 613 653 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 FunFam RING-type E3 ubiquitin transferase 277 352 - -
Cre07g1008 657 SUPERFAMILY RING/U-box 274 351 - -
Cre07g1008 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SMART Ubox_2 281 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre07g1008 657 FunFam RING-type E3 ubiquitin transferase 557 656 - -
Cre07g1008 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 542 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 MobiDBLite consensus disorder prediction 251 275 - -
Cre07g1008 657 Pfam Armadillo/beta-catenin-like repeat 407 446 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 SUPERFAMILY ARM repeat 368 651 IPR016024 -
Cre07g1008 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515(InterPro)
Cre07g1008 657 Coils Coil 153 173 - -
Cre07g1008 657 FunFam RING-type E3 ubiquitin transferase 455 555 - -
Cre07g1008 657 PANTHER U BOX DOMAIN-CONTAINING 36 653 - -
Cre07g1008 657 CDD RING-Ubox_PUB 279 331 IPR045210 -
Cre07g1008 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
Cre07g1008 657 Gene3D - 556 656 IPR011989 -
Cre07g1008 657 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2329 Cre-Chr2:36774721 Cre07g1008 Cre-Chr7:12813482 7.50E-62 dispersed
Cre05g2297 Cre-Chr5:34538688 Cre07g1008 Cre-Chr7:12813482 9.20E-09 dispersed
Cre07g1008 Cre-Chr7:12813482 Cre09g1916 Cre-Chr9:37892964 3.70E-101 dispersed
Cre07g1008 Cre-Chr7:12813482 Cre03g0473 Cre-Chr3:3130810 3.80E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1008 - - - 0.0