Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1070 ATGGAGAAGGAAATGAAGAAGACGAGCCTGAAGATGGAGAAGGAAATGACCGAAGACGAGCCTGAAGAAACTGAAGAAGACGTGAGATGGTTGTACGAAATTCAGAGGGGGCCAGAGTCTGTGTTGCAGTTATGGGCTTGTAGCTTCCACTCTGTCAATCACTTCCCAATGGATCCCCCAACCTCCCACCGTAGTCGCAGAACCACCAACAAATCTGAGCTCTACTCCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGACAACAATCCTGACGATCGGAATCTTCACCCTCCACGAAGGCTACCCAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGCGGCGACGACGACGACGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGTCTTCCCAAGGATTTCGGTGGCGGAGCCCCAATTGACTACGAGGACGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTCGGTACCATGATCGTCAAGACGGACAGAAATCGTCCTCGAAATCGCTCTATGTCTTCTTCAGTTTCGACGAAGCCTCGAACTTCGCCGCTGTCGTTTATGAACTTTCAGCCGGGGAGCCCCGGAAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGAGTATTCTACGTTTGTGGTGAGGTCCACGGGGAGGTCGCGGAACAGAGAATCTGTTAGTGGGACTGTTGTTCGAAGGACTGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACATGAGGGGTCCACGATGGGCAGAGCGGTCGCCAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCAAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTATGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTTCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAACCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGTTGTTCCATGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGGAGGATTTGTTCTTGATCTTGAATCATGTTCTTGTCTTCTTTGAAGAAATGTTAGGTTTGAGGATAAATAGGGGTAAATGCTGTATTATGGGGCTCAATTATGTTGATGAAAAACTAGAAGATGGGTAG 1863 47.56 MEKEMKKTSLKMEKEMTEDEPEETEEDVRWLYEIQRGPESVLQLWACSFHSVNHFPMDPPTSHRSRRTTNKSELYSTVVIHSNSDSDSDNNPDDRNLHPPRRLPSEGQDLYATMLYKDVDKPRGDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMIVKTDRNRPRNRSMSSSVSTKPRTSPLSFMNFQPGSPGKRAGSEEGDDSEEDDGDEYSTFVVRSTGRSRNRESVSGTVVRRTAGSRSGSRDGGGGHEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEPLEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKEDLFLILNHVLVFFEEMLGLRINRGKCCIMGLNYVDEKLEDG 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15983830 15996737 - CrPI670011_07g010700.1 Cre07g1070 503651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1070 620 MobiDBLite consensus disorder prediction 232 255 - -
Cre07g1070 620 MobiDBLite consensus disorder prediction 285 324 - -
Cre07g1070 620 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 300 580 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Cre07g1070 620 CDD STKc_MAP4K3_like 327 578 - -
Cre07g1070 620 FunFam serine/threonine-protein kinase dst1 isoform X1 325 596 - -
Cre07g1070 620 FunFam Aurora kinase A 320 409 - -
Cre07g1070 620 MobiDBLite consensus disorder prediction 1 26 - -
Cre07g1070 620 SUPERFAMILY Protein kinase-like (PK-like) 325 583 IPR011009 -
Cre07g1070 620 MobiDBLite consensus disorder prediction 81 151 - -
Cre07g1070 620 ProSiteProfiles Protein kinase domain profile. 328 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1070 620 MobiDBLite consensus disorder prediction 87 102 - -
Cre07g1070 620 MobiDBLite consensus disorder prediction 172 273 - -
Cre07g1070 620 SMART serkin_6 328 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1070 620 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524(InterPro)
Cre07g1070 620 Pfam Protein kinase domain 328 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1070 620 MobiDBLite consensus disorder prediction 182 203 - -
Cre07g1070 620 Gene3D Transferase(Phosphotransferase) domain 1 324 590 - -
Cre07g1070 620 MobiDBLite consensus disorder prediction 1 17 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1070 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1070 Cre-Chr7:15983830 Cre11g1591 Cre-Chr11:26097022 2.90E-273 dispersed
Cre07g1070 Cre-Chr7:15983830 Cre03g1805 Cre-Chr3:34901700 3.50E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g2191 . 104 789 MAP Kinase Kinase Kinase Kinase AT1G53165 64.0 1.5e-225 779.6
Cre11g1591 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.6e-67 253.4
Cre07g1070 . 326 578 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.6e-65 247.3
Cre11g2191 . 104 788 MAP Kinase Kinase Kinase Kinase AT3G15220 65.9 4.0e-231 798.1
Cre11g1591 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.6e-67 254.6
Cre07g1070 . 326 578 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.5e-65 248.1
Cre11g1591 . 4 597 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 2.1e-170 596.7
Cre07g1070 . 60 578 MAP Kinase Kinase Kinase Kinase AT1G69220 60.5 4.3e-152 535.8
Cre07g1069 . 46 364 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.3e-81 300.8
Cre01g0552 . 88 755 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 6.2e-253 870.5
Cre05g0552 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.6e-96 350.9
Cre10g0347 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 2.9e-248 855.1
Cre10g0347 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.9 4.0e-247 851.3
Cre10g1435 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 2.8e-132 469.5
Cre10g0347 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 5.2e-118 422.2
Cre10g1435 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 7.7e-216 747.3
Cre01g0552 . 88 415 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.9e-103 372.9
Cre10g1435 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.2e-87 320.1
Cre10g0347 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.6e-75 280.0
Cre05g0552 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 60.2 2.6e-144 509.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64263 PF00069 Pkinase 1.60E-66 CL0016 Cre PK