Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1135 ATGTGTGTGGAGCCTACCCTAGTGAGGCAGAGTCATCGTTTTCATGGGGGACCGAAGTTCCGTCCGATAATGAGAGAGTTTATAACTATAAATATCTTCTTCGTTCTTCGCCTTCCTCCACCGCTAAACGCTCTACAAAATTCGAAAACAAATCCTCATTCATCAACACCAAAACCAATTAAGATGCTCTTCTTCAAATCTTCATCCGGAGCTGTGCACCAGGAATCCCAGCCGCCGGAGGAGGTCAAGAGAGGCGGCGCCGGTTCCGCCCCGTGTATCTCACTGACGGTGTGGAGGAAGTCACTGCTACTCACCTGCAACGGCTTCACAGTGATCGATCGTAACGGAAATATCGTATACAGAGTCGACAATTACACCGGACGGCCGGAGGAAATGATTCTGATGGACGGTCTCGGAAAATCCATCCTCACAATGTGCCGCTCCAAGAAGCTAGGATTAGGAGAGAACTGGTGCGTGTACGAAGGGGAAGTAGGAGGAGAAAGTAGGGCAAGAAAGGAACCGATATGTCGAGTGAGGAAGAACATGAACATACTACATGTGGTTCCGAATACGAGAGTGCTTGCGTACGTATACGATTACAGAATCTCGAAGAAAAAGTATGCGTACAGTGTGGAAGGTTCGTACGGGCACCGATCGTGCAAGGTATTGGACGCATCGAGGAAAGTGGTGGCGGAGGTGAAGAGGAAGGAGGCGGTGAAAGGCGGCGTTTGTTTTGGGGCGGAAGTTTTTCTTCTGCTCATTCTTCCTGATTTTGAACCCGGACTGGCTATGGCTTTGGTTTTACTTTTGGATCAAATGTTCTCTTAG 828 48.91 MCVEPTLVRQSHRFHGGPKFRPIMREFITINIFFVLRLPPPLNALQNSKTNPHSSTPKPIKMLFFKSSSGAVHQESQPPEEVKRGGAGSAPCISLTVWRKSLLLTCNGFTVIDRNGNIVYRVDNYTGRPEEMILMDGLGKSILTMCRSKKLGLGENWCVYEGEVGGESRARKEPICRVRKNMNILHVVPNTRVLAYVYDYRISKKKYAYSVEGSYGHRSCKVLDASRKVVAEVKRKEAVKGGVCFGAEVFLLLILPDFEPGLAMALVLLLDQMFS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23180318 23181291 + CrPI670011_07g011350.1 Cre07g1135 503716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1135 275 Pfam LURP-one-related 92 268 IPR007612 -
Cre07g1135 275 SUPERFAMILY Tubby C-terminal domain-like 92 274 IPR025659 -
Cre07g1135 275 Gene3D - 90 275 IPR038595 -
Cre07g1135 275 PANTHER - 91 274 IPR007612 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1135 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1135 Cre-Chr7:23180318 Cre10g2389 Cre-Chr10:37927103 2.30E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g52 . . . . . . . Bma14g00595 . Cmo16g00627 . . . . . Cpe14g00489 . . . . . . . . Cla07g00743 Cam07g0795 Cec07g0861 Cco07g0830 Clacu07g0776 Cmu07g0783 Cre07g1135 . . Cone6ag0816 Cone9ag0816 . . . Cme07g01610 . . . . . . . . . . . . Cma16g00578 . . . . . . . . . . . . . . . . . . . Csa04g00615 Chy07g01196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009392 0 1 0 3 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34