Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1140 ATGGGAACTTCTTCATTGATTAATAATTGTGAAATTGATTGGGATGGGCTTTTTTCTGGATCATCTTGTTTGAGTAATATAGAGATGGAGAAGGGAATTTGTGGAAGTGAGGATCAGGTTATTGCAGCAATGGGAGATTATGATAATGTTGTGAATATTGGAGGAATAAAAGAGGGTGATATTGGTGGAGGGAAGAATAATTGTAATAAAGGGAAAGTGGTGATGGGTAAAAGAAGAAGTGCAATGGCTCCAAGGATTGCTTTTCAGACAAGGAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCAGTCAAACATAGCAATCATCCTAGGAGCTATTACCGGTGTACACATCACACATGCAACGTTAAGAAACAAATTCAAAGGCACGCCAAGGATCCGACCATAGTGGTGACAACATATGAAGGGATTCACAACCATCCATCTGAGAAATTAATGGAGACTCTAAGCCCTCTTCTTAAGCAATTGCAGTTCCTTTCTGGCATTTAG 531 39.92 MGTSSLINNCEIDWDGLFSGSSCLSNIEMEKGICGSEDQVIAAMGDYDNVVNIGGIKEGDIGGGKNNCNKGKVVMGKRRSAMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHAKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLSGI 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23292946 23295160 - CrPI670011_07g011400.1 Cre07g1140 503721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1140 176 Gene3D WRKY domain 82 156 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g1140 176 SUPERFAMILY WRKY DNA-binding domain 90 156 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g1140 176 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 69 155 IPR044810 GO:0003700(InterPro)
Cre07g1140 176 Pfam WRKY DNA -binding domain 98 155 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g1140 176 SMART WRKY_cls 97 156 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g1140 176 ProSiteProfiles WRKY domain profile. 92 157 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g1140 176 FunFam WRKY transcription factor 57 83 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1140 Cre-Chr7:23292946 Cre09g0476 Cre-Chr9:4541985 1.30E-24 dispersed
Cre07g1140 Cre-Chr7:23292946 Cre07g1142 Cre-Chr7:23410872 1.90E-12 proximal
Cre07g1901 Cre-Chr7:34464057 Cre07g1140 Cre-Chr7:23292946 2.20E-30 transposed
Cre05g1530 Cre-Chr5:20665358 Cre07g1140 Cre-Chr7:23292946 1.30E-29 transposed
Cre05g0203 Cre-Chr5:1981138 Cre07g1140 Cre-Chr7:23292946 8.60E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54022 PF03106 WRKY 7.30E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1140 - - - 0.0