Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1144 ATGGCAGTCTCCGCCCCCTTCTTCGCCTCTCCCACCGCCGCCACAACCTCCCACCAATCCCTTTCTCTTTCCTTCTATCCTCCTTCCTTTCCCAGAAGAAATTCCACTGCTGTTTCCTCCTCTTCTTCTCTACCTTCCTTCCGTCTCAATTCCGCCGCTTCTCCCTCTGTGGCGCCGACTACCGCCGTCAAATCCGATTCTCCTTCTAAAACCTTGCCGTTTCGGGTCGGACATGGCTTCGATCTTCACAGGTTGGAGCCTGGGTACCCTTTGATTATTGGGGGAATTAGTATTCCCCATGATAGAGGCTGCGAGGCTCATTCCGATGGGGATGTTCTACTACACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGACCCCAAGTGGAAGGGTGCTCCATCATCCGTATTCATGAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGACATAGGCAACTTGGATGCCACATTAATACTTCAAAGACCAAAGCTTAGTCCTCACAAGGAAGCTATCAGAGCAAACCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCGAAAACACATGAGAAAGTTGACAGCCTCGGCGAAAACAGAAGTATTGCTGCTCATACTGTGGTCCTCTTGATGAGGAGATAG 693 50.51 MAVSAPFFASPTAATTSHQSLSLSFYPPSFPRRNSTAVSSSSSLPSFRLNSAASPSVAPTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23458339 23462855 + CrPI670011_07g011440.1 Cre07g1144 503725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1144 230 FunFam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 71 230 - -
Cre07g1144 230 NCBIfam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 75 229 IPR003526 GO:0008685(InterPro)|GO:0016114(InterPro)
Cre07g1144 230 Gene3D - 71 230 IPR036571 GO:0008685(InterPro)|GO:0016114(InterPro)
Cre07g1144 230 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 26 229 IPR003526 GO:0008685(InterPro)|GO:0008685(PANTHER)|GO:0016114(InterPro)
Cre07g1144 230 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 108 123 IPR020555 GO:0008685(InterPro)
Cre07g1144 230 CDD MECDP_synthase 75 227 IPR003526 GO:0008685(InterPro)|GO:0016114(InterPro)
Cre07g1144 230 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 74 229 IPR003526 GO:0008685(InterPro)|GO:0016114(InterPro)
Cre07g1144 230 Pfam YgbB family 74 227 IPR003526 GO:0008685(InterPro)|GO:0016114(InterPro)
Cre07g1144 230 SUPERFAMILY IpsF-like 73 229 IPR036571 GO:0008685(InterPro)|GO:0016114(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1144 K01770 - - csv:101212970 396.356
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g41 Blo02g01121 . . Bda08g00505 Bpe05g00658 . . . . . . . . . . . . . . . . . . . Cla07g00750 Cam07g0804 Cec07g0866 Cco07g0841 Clacu07g0784 Cmu07g0792 Cre07g1144 . . Cone6ag0810 Cone9ag0809 . . . Cme07g01615 . . . . . . Bma05g00831 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00610 Chy07g01201 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 33