Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1156 ATGGCGTTGCAAGAACAACTAGATAGGTTTAAGAAACAGCAAGAAAGATGTCAGACTACTTTGTCTGGCATTGCTGCATCCAAGTCTGCGTCCAAGTCTACACCCAAGTTTACGCCTGCACCAGCTGTTTCCATTGCAAGACCTCCGGCTCCTGCTGTAAAATTTTCAAATGATACGGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCTGTCGGGGCTCAAATCAAGAGGGTTATTGACCTACTGCTGGAGACAAGGCAAGCCTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCCAACAAGGCTGTCTATGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAGTCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCCAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAGGTAGACGATGATCTGAAGCAACTCTTTCGGGATATTGAATTACCTCGTGACATGCTTGATGTCGAAAAGGATCTGCAGAAGAATGGGATGAAGCCTGCAACCAACACAGCAAAGAGGCGAGCCAATGCACAACATGTAGCATCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGAACTAAGCTCACCAATGCACATCTTCCCGAGCTCTTCAAAAACTAG 834 44.24 MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23770011 23776751 + CrPI670011_07g011560.1 Cre07g1156 503737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1156 277 Pfam TFIIE beta subunit core domain 77 134 IPR003166 GO:0006367(InterPro)
Cre07g1156 277 MobiDBLite consensus disorder prediction 226 277 - -
Cre07g1156 277 PIRSF TFIIE-beta 1 277 IPR016656 GO:0005673(InterPro)|GO:0006367(InterPro)
Cre07g1156 277 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 61 136 IPR003166 GO:0006367(InterPro)
Cre07g1156 277 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 277 IPR016656 GO:0001097(PANTHER)|GO:0005673(PANTHER)|GO:0005673(InterPro)|GO:0006367(PANTHER)|GO:0006367(InterPro)
Cre07g1156 277 MobiDBLite consensus disorder prediction 229 243 - -
Cre07g1156 277 Pfam TFA2 Winged helix domain 2 136 193 IPR040501 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1156 K03137 - - csv:101211845 527.709
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g357 . . . . . . . . . Cmo16g00635 . . . . . Cpe14g00496 . . . . . . . . Cla07g00760 Cam07g0816 Cec07g0876 Cco07g0851 Clacu07g0794 Cmu07g0802 Cre07g1156 . . . . . . . . . . . . . . . . . . . . Cma16g00586 . . . . . . . . . . . . . . . . . . . . Chy07g01207 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006900 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 35